Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RIMS2_0013100

Sequence Length

632 nt

GC Content

0.4035

CACCCUGUAACCUGGCAACCAUCUAAAGAUGGAGAUCGUUUAAUUGGUCGCAUUUUAUUAAAUAAGCGUCUAAAAGAUGGAAGUGUACCUCGAGAUUCAGGAGCAAUGCUUGGCUUGAAGGUUGUAGGAGGAAAGAUGACUGAAUCAGGUCGGCUUUGUGCAUUUAUUACUAAAGUAAAAAAAGGAAGUUUAGCUGAUACUGUAGGACAUCUUAGACCAGGUGAUGAAGUAUUAGAAUGGAAUGGAAGACUACUGCAAGGAGCCACAUUUGAGGAAGUGUACAACAUCAUUCUAGAAUCCAAACCUGAACCACAAGUAGAACUUGUAGUUUCAAGGCCUAUUGGAGAUAUACCGCGAAUACCUGAUAGCACACAUGCACAACUGGAGUCCAUGAUAAAAACAAGAGAAGAACUAAAACAGUAAAGAAAACAUUGGAACCCAAAUGGAACCAAACAUUCAUUUAUUCUCCAGUCCACCGAAGAGAAUUUCGGGAACGAAUGCUAGAGAUUACCCUUUGGGAUCAAGCUCGUGUUCGAGAGGAAGAAAGUGAAUUCUUAGGCGAGGGUCAAAGAGAAUAAGUGAUAGUGAAGUCUCUGACUAUGACUGUGAUGAUGGAAUUGGUGUAGUAUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-138.50 kcal/mol

Ensemble Metrics

Free Energy: -152.91

Frequency: 0.0000

Diversity: 216.15

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..(((((((((((((..(((((....)))))....(((((..((((.(((((((....))))..))).)))).))))).((((((..(((.........)))..)))))).)))...))))))))))..).((((((.((....((((((((((...(.(.(((.((((....)))).))).).).....))))))).)))..)).))))))....(((((...((....(((((((((....(.(.(((.((.((((........)))).)).))).).)....)))))))))..))...)))))..(((...((((..((((......))))..))))))).(((((..(((.(((.((......((((((((.((.......)).)))).........(((((...((((.................((((..((.....))..))))....((((((((((((..((.(.(((((......)))))).))..((.((((((......)))))).))....((((....))))...(((((......))))).(((....)))...))))))))))))))))....))))).........)))).....)).))).)))..)))))..

Thermodynamic Ensemble Prediction

(..(((((((((({((..(((((....))))).{{{(({{,..,|||}|{{,{{{,...,,,,..}||||},,.)))))}|{||||..(((,,,..,,,,|}},.,}}))).})),,,))))))))))..,.{{{{((,((....{{||||(((({{.(.,.((({((,,...,)))),.,.}.})}}},.})|||||,|||,,||.}}}))}....(((((..{{..,{.(((((((((..,,,.{.(((.((.((((........)))).)).))).).}....))))))))}..|{||.}||||{{(.((((((,,.}||||}.},},)}})}.,,,)))),{{{{{..{{|.{{|,|||,...{((,.,.|}},,...{{|.||{||{,.........,,,,,...{{{,.....,,..........{(((..,||..,,)}..}}},.,,,((((((((((((..,,,{.(((((,....,)))))|.,|{,,{,(({({(,...,,|}}})),))}..,|{{{|,|})}||,|,,,,,,......))))}.{||,..,)))...)))))))))))|||||.,,,||,,},}}},}.}}))),,,.,,)).}}),))),,))))),}