Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RIMS2_0017500

Sequence Length

444 nt

GC Content

0.4842

AGCCAAAGCCUUAGUAGAAGAACAACGCCUUUUGUUCCUAGGGUUCAGUCGGAAUGUGGAACAGGGGCUUCGAGGGACCCGCACUAUGACCGGACAUUAUAAUACAAUUAGCCGAAUGGACAGACAUCGUGUCAUGGAUGACCAUUAUUCUCCAGAUAGAGACAGUCAUUUUCUUACUCUACCUCGCUCCAGAUACAGUCAGACCAUUGACCAUCAUCACAGGGAUGGCAGGGAUUGUGAAGCAGCAGAUAGACAGCCAUAUCACAGAUCCAGAUCAACAGAACAACGGCCUCUCCUUGAGCGGACCACCACCCGCUCCAGAUCCACUGAACGUCCUGAUACAAACCUCAUGAGGUCGAUGCCUUCAUUAAUGACUGGAAGAUCUGCCCCUCCUUCACCUGCCUUAUCGAGACAAUGGAGUCAAGGAGAUAGAACCUUAUGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-101.50 kcal/mol

Ensemble Metrics

Free Energy: -111.31

Frequency: 0.0000

Diversity: 172.87

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((....((((((..((..((((((......)))))).(((((((((((.(((.(.((((...(((((...((((..........((((((((..................)))(((((.((..(((......)))..)).)))))..((((......))))..)))))............))))))))).(((...((((......)))).)))....((((((.(((..(((((((((....((.........))....))))).)))).................)))..)))))).((((........)))))))).)))))))))))..))))........))..))))))....))((((((..........(((.((((...((((((.((...((.............)).)).)))))).))))..)))))))))

Thermodynamic Ensemble Prediction

.((....||(((.{,,,..{{{{{{.,.,,,}})))||{{({((((.{{,{{,,|,(({|..|{(({{..{{{((,..,,,,.,.{{{{{{({.{,,,..........,..}}}{{{{{.{{..{{|.,,,,.}||,.}|.}}}},..{(((......)))}..}}}}}..,||..,|||,}||}|{{{|,({{...((((,..,.|||||,,||,,..,{((((,({{{((({{(((({.,..({.{,,,....}}..,,))}|||||||{{.((,...{{,{,.{{{{{{{..||.((((((........))))))|||,,,,.}})..,,,,,||,........},},))))))).))..|}}.....))))))}}..,}}}),}}))|||))})}}}}|....,.,|.,..,))})),,}))))}},))}}))))},}))