Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RIMS2_0017800

Sequence Length

702 nt

GC Content

0.4345

AGCCAAAGCCUUAGUAGAAGAACAACGCCUUUUGUUCCUAGGGUUCAGAUAAAACUAUGGUUUGACAAGGUUGGUCACCAAUUAAUAGUUACAAUUUUGGGAGCAAAAGAUCUCCCUUCCAGGGAAGAUGGGAGGCCAAGGAAUCCUUAUGUUAAAAUUUACUUUCUUCCAGACAGAAGUGAUAAAAACAAGAGAAGAACUAAAACAGUAAAGAAAACAUUGGAACCCAAAUGGAACCAAACAUUCAUUUAUUCUCCAGUCCACCGAAGAGAAUUUCGGGAACGAAUGCUAGAGAUUACCCUUUGGGAUCAAGCUCGUGUUCGAGAGGAAGAAAGUGAAUUCUUAGGCGAGUCAUUUUCUUACUCUACCUCGCUCCAGAUACAGUCAGACCAUUGACCAUCAUCACAGGGAUGGCAGGGAUUGUGAAGCAGCAGAUAGACAGCCAUAUCACAGAUCCAGAUCAACAGAACAACGGCCUCUCCUUGAGCGGACCACCACCCGCUCCAGAUCCACUGAACGUCCUGAUACAAACCUCAUGAGGUCGAUGCCUUCAUUAAUGACUGGAAGAUCUGCCCCUCCUUCACCUGCCUUAUCGAGACAAUGGAGUCAAGGAGAUAGAACCUUAUGAAGGAAAAUUGGUCCUGGAAAUUGAAACCCUAAAUGUCAUGAAAGAACUGGACUCUACAAGGAGAAGAUAUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-170.10 kcal/mol

Ensemble Metrics

Free Energy: -184.44

Frequency: 0.0000

Diversity: 238.49

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.((((((((.....((((((......))))))))))))))..(((......((((((((((..((((((...))))))................(((((.....((((((((...)))).))))((((..(....)..)))).(((((....(((((((((((((.....................).)))))).......))))))...)))))((((....(((((((........)))))))....)))).....(((((......)))))(((((...(((...(((..(((...)))))).)))...))))).((((..(((((((((.(((......))))))))))))..)))).....))))).......)))))))))).....)))....((((((.((.((((..(((......)))((((........)))).(((((((((.(((...(((((.(((((((.....((((((........))))))(((.....))).......(((........))).))))))).))..))).....))))))))...)))).)))))).)).)))).(((.(((.((((..((..((((.....(((.(((...............))).)))....))))..)).....)))).))))))...))).))((.((...........)).))

Thermodynamic Ensemble Prediction

.{({{...((((.(({{,.({{({,...,,,|||||||(((((((,.{,,..,,{,((((({((((...,,,,}}}}}))}},..,,}}}..,,,}}}||||||,,,,,{{{(((((,,.|}}},,}}}(((({{({.,((..,||},,{(({....(((((((((((({........,},......,,..,.}}}},}.......)))}}}...,}}||((({..,.(((((((........)))))))....)))}}}...(((((,....,))))){,,((,,{(({,{,({,..(({...)))})}.,,)}.})))))}((((.,((((((((||(((......))))))))))))..))))..,|,|||||,|,....||||,.||.,{{|,.,,,.}},.,||||}||}{{(({{(((({....({.{,,.....}}..,.))}|||||||,{.{(,...||.{,.{||||||,,,,.((((((........)))))){||.....},}...,,.,||,........|||,|||||}}.}}.,|||.....})}}}))}.,,}}||.,,||||{|},|||},{,,.....|.,...}),)}.}}))}).},},,}}}}}}}}}))....}))}),|||,|.{||,..,}|||,...(((..(......)..)))}}},}})))....,,,.}.}}}