Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RIMS2_0018300

Sequence Length

457 nt

GC Content

0.4048

AUAAAACUAUGGUUUGACAAGGUUGGUCACCAAUUAAUAGUUACAAUUUUGGGAGCAAAAGAUCUCCCUUCCAGGGAAGAUGGGAGGCCAAGGAAUCCUUAUGUUAAAAUUUACUUUCUUCCAGACAGAAGUGAUAAAAACAAGAGAAGAACUAAAACAGUAAAGAAAACAUUGGAACCCAAAUGGAACCAAACAUUCAUUUAUUCUCCAGUCCACCGAAGAGAAUUUCGGGAACGAAUGCUAGAGAUUACCCUUUGGGAUCAAGCUCGUGUUCGAGAGGAAGAAAGUGAAUUCUUAGGCGAGAUUUUAAUUGAAUUAGAAACAGCAUUAUUAGAUGAUGAGCCACAUUGGUACAAACUUCAGACGCAUGAUGUCUCUUCAUUGCCACUUCCCCACCCUUCUCCAUAUAUGCCACGAAGACAGCUCCAUGGAGAGAGCCCAACACGGAGGUUGCAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-95.20 kcal/mol

Ensemble Metrics

Free Energy: -106.59

Frequency: 0.0000

Diversity: 137.31

Structure Visualization

Structure Prediction

MFE Structure Prediction

..........((((((((.....((((((.((.((((((((.....((((((...(((((((((((.((((((.......))))))(((.((((((..............((((((((((((........((.......)).........(((.....))).........((((((....(((((((........)))))))....))))))...(((((......)))))(((((...(((...(((..(((...)))))).)))...)))))....)))))))))))))))))).)))))))))))..)))..)))))).....)))))))).)).))).))).....)).))))))..(((((.....))))).....((((.((((((.....(((((((((....((..........))...))))))).))........)))))).)))).

Thermodynamic Ensemble Prediction

....,{{{{(((((((({..,{,,,||||,{{||,,|||||,....|((((,,,.||,,,,((((((((,,,|}}}..},)||||||{,,(((...))),....,,.{((((((((((((((...,....{|........,.........,{{.....,||.........{(((((....{((((((........)))))))....))))))...(((((,....,)))))|.,{(,{{{(({({(,,..{{|,,,)),})}...||{|}}}})),,.))))))))))))))).}},||||}|}||||,,|.,.,)))))}....{|||||,.},))})},{|||..,}))).},,}},,,||||.,}}}.})),}.....|(((.((((((.....,((((((((....((..........))...)))))))).}........)))))).)))).