Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RIMS2_0024000

Sequence Length

401 nt

GC Content

0.4713

CUGCAUAUCUUCUCCUUGUAGAGUCCAGUUCUUCUGUCUCAGACUGGUGUUUCUUUUUCGGCAAUGGUUUGUCAUCACUUAUUGUACCAUUCACCUUUUUCUGCUGGUCUUCCCAUGUAACUUCUGCCUUGACCUCUUCUCCCUGCUUUUCUUCCCCCUGCUCUUCCACAUGCUCAGUUUCUUCAUUAACUUCUUCAUAAGGUUCUAUCUCCUUGACUCCAUUGUUUCUAUCCAACGUUCCCUUUGGUGGAAGCUGUGGAAGCUGUCGGCCCCUUCGUCCUGCGACUGGAGUACUUGAUGGGCUUGUCUGGACAGACCCAGUACGAGGAUGAGACCUGCCAUCCCUGUGAUGAUGGUCAAUGGUCUGACUGUAUCUGGAGCGAGGUAGAGUAAGAAAAUGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.30 kcal/mol

Ensemble Metrics

Free Energy: -100.80

Frequency: 0.0000

Diversity: 147.12

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((.((((((((((..(((.(((((((.....)))...(((((((.((((........)))).))))))).......((((((.(((((((((........((.((((((.((.((((.((((((((..(((..........................((..........))..((((........)))).......((((........))))((((((((.(((((((.((((........))))))))))).)))))....)))((((((((((((....))).))))........))))).))).)).))))...)))))).))..)))))).)).......))))..)))))))))))...)))).)))..)))).))))))..))).........

Thermodynamic Ensemble Prediction

(((({,.,,,.,....,|||}|{,(((({,,,,{{,...,}}}}}||,,..........{({(({{{{,,},,.........,},}}}}}},.},......{(({((,,...}}}.}}},,,{((((({{(,,...........((.............||.,{((((.({({.,((((...,{{,,,|||,,.{{{{((((........)))}|{,(((((.(((((((.((((........))))))))))).))))).,..}}}{({,,.,((((({{.{||{{||,|{.,,.|,,||}},.||||||..}}},))))},)))))}}}}|{{{.|||{{|..,}}}}.)),))),)}})),,,)))})))}.}))))})))))))))},}))}.,.}}