Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RIMS2_0031700

Sequence Length

551 nt

GC Content

0.4501

CAGCACAAGCUACAUGUCUGUCCAAUCAGAACGCCCAGGAGGAAACAAGAAAAUCAGACCAAAGGGAAUAGAAGAGGGAGGGAAAGAAGGGGAUAAGCAUGAAGAGAUAGUUCAUGAGAAGGAAGAGGUAAAGGAAGAAAGAAUUAAUGAGAAUGAGAAAGGGAAAGAGAUUGCCAAAACGUGUAAUAAGGAGAAAAACAGAGAAUCAGGAGACGAGGAAAAAACACAAGAUAUACACGAGCAAGGGAAAGAAAAAGAACAGUGGAAUAAAGAGGAUUUGCAAAGGAGAUUCUCACAAGAUGAUACCAGUGUCUUUACAUCCAAAAUGCAAAGCAGACAAAUGGGCAUAUCAGGGAAGAACAUGACAAAAAGCACCAGCAUCAGUGGAGACAUGUGCUCACUGGAGAAGAAUGAUGGCAGCCAGUCUGACACUGCAGUGGGCACCUUGGGCACCAGUGGCAAAAAGCGGCGCUCUAGCCUUGGUGCCAAAAUGGUAGCUAUCGUUGGUCUGUCACGGAAAAGUCGCAGUGCUUCUCAGCUCAGCCAAACGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-112.50 kcal/mol

Ensemble Metrics

Free Energy: -122.53

Frequency: 0.0000

Diversity: 82.82

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((....))).....(((.(((..........(((.((..((..........))...))...)))..........))).)))..............((((((.......))))))...............................((((..((((((.((.((.....)).))....((((((................................................))))))......(((.....(((((.((.(((.((...((((((((.(...).))))))))........)).))).)))))))...))).....(((..((.(((...((((((.(((((.((..............(((((((......(((....)))((((((((((.((........(((...)))........)).))))))))))....((((((((.(((....(((...)))...)))))))))))....)))).))).)).))))).)))).)).....)))))..))))))))).)))))((....))

Thermodynamic Ensemble Prediction

((((....))).,.,.(((.(((..,,......(((.{{..,...........,,...}}...)))..........))).))}.......,..,...{(((({.......})))))...............................((((..((((({.({,,..,...||.||....((((((....................,{........................,.)))))).(((..(((.....((((,,((.(((.{{...((((((((.(...}.))))))))........,}.))).)))))))...)))....)))...((((((.{((((((.(((((.,......,..........{{.{{,,,....||},...||.((((((((((.((......{{(((...))}.}).....)).))))))))))..},((((((((.(((....(((...)))...)))))))))))....)))))))}.,)))}.)))))),.,}}....,)).,..),))))))).)))))((....))