Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RTN4_0003200

Sequence Length

170 nt

GC Content

0.4235

GAAACUCUAACCAGGGAAAGGGAAAAUGCAGGGCAUAUCUGGAAUCUGAAGUUGCUAUAUCUGAGGAGUUGGUUCAGAAGUACAGUAAUUCUGCUCUUGGUCAUGUGAACUGCACGAUAAAGGAACUCAGGCGCCUCUUCUUAGUUGAUGAUUUAGUUGAUUCUCUGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-27.60 kcal/mol

Ensemble Metrics

Free Energy: -32.67

Frequency: 0.0003

Diversity: 59.33

Structure Visualization

Structure Prediction

MFE Structure Prediction

(....)((...(((((((..(((..((((...)))).)))((..(((((.(((.((.((((.(.(.((((.(.....(((..(((.....)))..))).......).)))).).))))).)).))))))))..))((..((.((((...)))).))..))))))))).))

Thermodynamic Ensemble Prediction

{....}|(...(((((({..{{,..{(((,,.}|}|.|}}((..(((({{(((.((.((((,{,(.,{{,.,|||||{,{..{{|,,.,,)}).,}),,..,.},)}}})),),,)))}.)).))))))))..))|{.,{{.,{{{||.,},,.,},,}}))))))).})