Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RTN4_0005500

Sequence Length

250 nt

GC Content

0.3240

AUGAGACCCUUUUUGCUCUUCCUGCUGCAUCUGAGCCUGUGAUACGCUCCUCUGCAGAAAAUAUGGACUUGAAGGAGCAGCCAGGUAACACUAUUUCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACUUUCCUGUUCUUGUUUUCUUAAAAUGACAUUUUGUAGGCAGAAAUCAGUUUUAGUUUUGGGAAGAAAGAUUGAUUUUGCAAGAGAGAUGAAUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-39.60 kcal/mol

Ensemble Metrics

Free Energy: -43.82

Frequency: 0.0011

Diversity: 37.25

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((.......(((((((((..(((((...((((.........))))...))))).......)))......))))))((((((((....))))).)))..................................................(((((......))))).....)))))......((((((....((((((.((((((((..(((...)))..))))))))))))))....))))))......

Thermodynamic Ensemble Prediction

{,((((.......(((((((((..(((((...((((.........))))...))))).......))}.....,))))))((((((((....))))).)))..................................................(((({..,,,,}}))),}}|,||{{,......((((((....(((((((((((((((..(((...}))..))))))))))))))....)))))).,}}))