Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RTN4_0007300

Sequence Length

419 nt

GC Content

0.3747

AUAGUAAGGAAGAUAGUGAUAUGUUGGCUGCUGGAGGUAAAAUCGAGAGCAACUUGGAAAGUAAAGUGGAUAAAAAAUGUUUUGCAGAUAGCCUUGAGCAAACUAAUCACGAAAAAGAUAGUGAGAGUAGUAAUGAUGAUACUUCUUUCCCCAGUACGCCAGAAGGUAUAAAGGAUCGUUCAGGAGCAUAUAUCACAUGUGCUCCCUUUAACCCAGCAGCAACUGAGAGCAUUGCAACAAACAUUUUUCCUUUGUUAGGAGAUCCUACUUCAGAAAAUAAGACCGAUGAAAAAAAAAUAGAAGAAAAGAAGGCCCAAAUAGUAACAGAGAAGAAUACUAGCACCAAAACAUCAAACCCUUUUCUUGUAGCAGCACAGGAUUCUGAGACAGAUUAUGUCACAACAGAUAAUUUAACAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-72.80 kcal/mol

Ensemble Metrics

Free Energy: -81.74

Frequency: 0.0000

Diversity: 111.72

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((((..(((...(((((((((((((((((...((((((((((((((........))))..........)))))).).))).))))(((((..((((.((........))))))(((((.((((.......)))).))))).((..((.(((....))).))..))...)))))(((((((((.....))))))))).......))))))))..............)))))..)))))))))))(((((((..(((.....((((((.......((..((.........((.((((((((..((......(((((...........)))))................)))))))))).))....))..)).))))))((((.....))))......)))..)))))))...

Thermodynamic Ensemble Prediction

.....,(((((({..(((.,.{((((((((((((,({(....(({((,((,{{((,.,,,,..}}}|..........}})))).},}.,.))))|||{{..(((,,((........))))))(((((.((((.......)))).))))).((..((.{{{....))).)}..))...}}}},(((((((((.....)))))))))......,)))))))),,}.....,},,,,}},},..}}}))))))}|{{{((((..,,|}},,{(((,,.........,..||.........,{.{{{{{{{(..{{......(((((.,......,..))))).................,))))))}},},.....},})),}}))|,((((.....))))......,},..,}},,,,...