Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SATB2_0001000

Sequence Length

418 nt

GC Content

0.4569

GGGGUGGAUUGGGAGGAAGGGAGAGAGGAAGAGAACUUCAAAGACAUUACAAAUGCAUUCUACUUAAUCUGAAAUACUUUGAUGCUUCUGGAAAAAUAUAUGGCGGUGUUUUCAUUACAAGUGCCAUUUGUGCGGAGGGAGCAGCUGAGUAUGCUACAAGAUGACAGGAACCGUUCCCAGGCGGCACUGCUUUCACAUGGACAUCCCGAGAGACUACCAGGAAGAUGAAUUCAGGCUACCAGAAGAUGAAUUAGGAUAUGAAGUGACAAGUAGAGUGAAGAUGCAGAACUUGCUGUGAUCCCAGGACUCCCUUCAGUGGAACCUCUGUGCUGAGAAUACUAAUGGCCUAUUUUCACAUGUAUGACUCUUCCGGGAAUGACCACCUGGAAUUCUACCUCUUUCCCUCCCAUGUAUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-103.20 kcal/mol

Ensemble Metrics

Free Energy: -112.55

Frequency: 0.0000

Diversity: 135.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(.(((.((.((((....((((((((((.(((.........(((((((...))))...))).....((((...((((((...(((((((......(((.((((((.(((.......)))..)))))).))).....)))))))...))))))......))))..(((...(((((....)))))..))).(((((..(((.(((((((((((.((((..(((((((......((((((..((...((...((((.(((.((.((..((....((((...(((((((......)))).))).....)))).......))..)).))))).))))..)).))..)))))))))))).)..))).).))))..)))).))).)))..))))).))).)))))))))))))))).))).)..

Thermodynamic Ensemble Prediction

.{.(((.(,{((((,..,((((((((((.((({.........,.((({...,}}}{,{{{{,,,,.{(((...((((((.,.(((((((......(((.((((((.(((.......))},.)))))).))).....))))))}.|.})))))......}))),.{{{...{{({|,...})))),.))},{((({..(((.{{(({{{{{{|.,,,{,.,{{{{{{,,,..,{{|{{{,,||.},,|...||{|.{|{.{{.|{..{|}|,,||||,..(((((((......)))).}))..,,,}}}},},,...})..}}.}})}}.}})),.||,}}..})))))}})))),}..))}.}.}))||,||||..}}.}}},,))))},))).)))))))))))))))}.))).)..