Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SATB2_0001500

Sequence Length

354 nt

GC Content

0.5480

GCCAAAACCUCGACACCGACAACAGACCUCCCUAUUAAGGUGGACGGCGCCAACAUCAACAUCACAGCUGCCAUUUAUGACGAGAUCCAACAGGAGAUGAAAAGGGCCAAGGUGUCUCAAGCCCUGUUUGCCAAAGUGGCUGCAAAUAAAAGUCAGGGCUGGCUGUGUGAACUGCUCCGCUGGAAGGAGAACCCAAGCCCAGAAAACCGCACCCUCUGGGAAAACCUCUGUACCAUCCGUCGCUUCCUGAACCUUCCCCAGCAUGAGAGGGAUGUCAUCUAUGAGGAGGAGUCAAGGCAUCACCACAGCGAACGCAUGCAACACGUGGUCCAGCUUCCCCCUGAGCCGGUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.00 kcal/mol

Ensemble Metrics

Free Energy: -99.88

Frequency: 0.0000

Diversity: 61.77

Structure Visualization

Structure Prediction

MFE Structure Prediction

(......)((.(.(((((.........(((..(((..((((((.((((..................)))))))))))))..))).(((....)))........((((((..((((..(((((((((...((((...)))).............))))))).((((((((((((.((((.(((((.((.....))...((((((...........)))))).............(((((.((.(...(((.........)))...).)).)))))...)))).).)))).))).......))).)))))).......))..)))).)))))).((((......))))))))))))

Thermodynamic Ensemble Prediction

(......)((.(.(((((......,,.(((..,,,..{(((((.((((..................)))))))))},},..))).|{{..,,||},..,....((((({..((((..({(((((((,,,((({...})))..........,,.))))))).(((((((((,((,((((.{(((,.{{,,...},...((((((...........))))))....,{||,,...(((((.((.{...(((.........)))...}.)).))))).,.}}},.),))})})))...,...))),,))))).......})..)))).)))))).{{{|...,,,)})}))))))))