Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SATB2_0007600

Sequence Length

250 nt

GC Content

0.4360

UGCUGCAUGUGGGGUGGCCUUUGCUUUAUGGGAAGACUGCCGUUUUGCCUUGUCCUGGCUCUCUGUCACAGCCUGCUGCCCAUUCACCCCCUCUUACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGUCUCUCCAGAUAUCUACCAGCAAGUCAGAGAUGAGCUGAAGAGGGCCAGUGUGUCCCAAGCUGUCUUUGCAAGAGUGGCAUUCAACCGCACACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-49.70 kcal/mol

Ensemble Metrics

Free Energy: -52.56

Frequency: 0.0097

Diversity: 65.22

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((..((((((((((.((((.(.....).)))).)))))....((((........(((((.(((.(((((.((..((.((((....(((((((.......................................................(((.((((....)))).)))..((((..(((...)))..)))))))))))..)))).))..)).)))))....)))))))))))).....)))))))...

Thermodynamic Ensemble Prediction

...{{..(((({(((((,({{{,(,....|.||||,|}||}.,.,{{|{.......|(({((,({{.{((({.{(.,{{.{({,....(((((((.......................................................(((.((((....)))).)))..((((..(((...)))..)))))))))))..}))).)}..)).))})),,.,})))))))))),..,..))})))),,.