Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SATB2_0009500

Sequence Length

250 nt

GC Content

0.3080

GGGGUGGAUUGGGAGGAAGGGAGAGAGGAAGAGAACUUCAAAGACAUUACAAAUGCAUUCUACUUAAUCUGAAAUACUUUGAUGCUUCUGGAAAAGUGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAUGAUUUCAUCCAUUGUAAAUAGCACAUAUUAUGCCAAUGUGUCAGCAACCAAGUGCCAGGAGUUUGGGAGAUGGUAUAAAAAGUACAAGAAGAUUAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-30.31 kcal/mol

Ensemble Metrics

Free Energy: -34.70

Frequency: 0.0008

Diversity: 41.01

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((((((.((((.(.(.....((((....))))..............).).)))).))))))))).....(((((((.((((((((.((((.(....................................................).))))..)))..........(((((((((.....)))))))..)).((((..(.((((....)))).)..))))............))))))))))))

Thermodynamic Ensemble Prediction

....(((((((((.((({.,.......(({{....)))).....{,{,...,}),).)))).))))))))}.....(((((((.(((((({,..,,{.,....................................................,.,,}},,}}}..,,......(((((({{{.....}))))))..}}.((((..(.((({....}))).)..))))..........,.))))))))))))