Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SATB2_0010900

Sequence Length

250 nt

GC Content

0.4280

GUUUGAUGAUUCCUGUCUUUUGUGUCGUGGAGCAGUUGGACGGCUCUCUUGAAUAUGACAACAGAGAAGAACACGCCGAGUUUGUCCUGGUGCGGAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCUGGAGUACAGUGGCAUGAUCUCAGCUCACUGCAGCCUCUGCCUCCCGGGCAGAAGCAAUUCUCCCCGCUCAGCCUCCCAAGUAGCUGGCAUUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-54.10 kcal/mol

Ensemble Metrics

Free Energy: -59.39

Frequency: 0.0002

Diversity: 51.54

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..(....)..)((((.((((((((((((((((.((...)).))))).......))))).)))))).......((((.((......)).).))).........................................................(((((.....(((((((.((....)))).))))))))))(((((((...))))))).............((.((((..(....)..))))))...))))

Thermodynamic Ensemble Prediction

(..(....)..)(((({((((((((((((((({,((...,,.))))),......)))))},))))),.,....{(((,{(......})})}|{|{..{{,..................................................,(((((.....(((((((.((....)))).))))))))))|((((({...})))))}......}))..))||.{(((..{....}..))))))...})))