Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SATB2_0013600

Sequence Length

250 nt

GC Content

0.4040

GUUUGAUGAUUCCUGUCUUUUGUGUCGUGGAGCAGUUGGACGGCUCUCUUGAAUAUGACAACAGAGAAGAACACGCCGAGUUUGUCCUGGUGCGGAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCUCAGCUCACUCCUGCUGUCACACAAGCUCCCUCCUAAGUCAUUAGAGUGCUGGCAUGGACUCUUUCCGGAUCAGUCAGAGAUGCAUUAGGAGAGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-51.40 kcal/mol

Ensemble Metrics

Free Energy: -57.46

Frequency: 0.0001

Diversity: 40.50

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.((....((.(((((..(((((((((((.((...)).))))).......))))))..)))))))....((((.((......)).).))).............................................................((((........))))...)))))))((((((((((..((((....((((((..((((.....))))..)))).))..))))..))))))).)))

Thermodynamic Ensemble Prediction

(((((.((,,,,,{,((((((((((((((((({,((...,,.))))),......)))))},))))))}),.|.((((,{(......})})}),).............................................................((((........)))),},,,)))))((((((((((..((((....,(((((..((((.....))))..))))}},..))))..))))))).)))