Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SATB2_0013700

Sequence Length

250 nt

GC Content

0.3760

GGGGUGGAUUGGGAGGAAGGGAGAGAGGAAGAGAACUUCAAAGACAUUACAAAUGCAUUCUACUUAAUCUGAAAUACUUUGAUGCUUCUGGAAAAGUGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCUCAGCUCACUCCUGCUGUCACACAAGCUCCCUCCUAAGUCAUUAGAGUGCUGGCAUGGACUCUUUCCGGAUCAGUCAGAGAUGCAUUAGGAGAGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-43.50 kcal/mol

Ensemble Metrics

Free Energy: -48.77

Frequency: 0.0002

Diversity: 44.90

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..((((((.(((((..((.((((((..(((((((......................)))).)))..)))....((((((............)))))).......................................................)))..))..)))))...))).)))...)((((((((((..((((....((((((..((((.....))))..)))).))..))))..))))))).)))

Thermodynamic Ensemble Prediction

(..((((({,((,(((,{(.(((.(({((((....))))...,.{{{,...,}}},.,|{|,{{{..{{,{{,.,,,,,,..,,.}},.},,.})))}.......................................................)))..))}.))))).},))).)))...)((((((((((..((((....,(((((..((((.....)))),.))))}},..))))..))))))).)))