Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SCMH1_0005700

Sequence Length

360 nt

GC Content

0.5500

UUGUGAUUCCAAAGAAUCCCUAUCCUGCCUCCGAUGUGAAUACUGAGAAGCCCAGCAUCCACAGCAGCACCAAAACUGUCUUGGAACAUCAACCAGGGCAGAGGGGGCGUAAACCAGGAAAGAAGCGGGGCCGGACACCCAAGACCCUAAUUUCCCAUCCCAUCUCUGCCCCAUCCAAGACAGCUGAACCUUUGAAAUUCCCAAAGAAGAGAGGUCCCAAACCUGGCAGCAAGAGGAAACCUCGGACUUUGCUGAACCCACCACCUGCCUCACCAACAACCAGCACUCCUGAACCGGAUACCAGCACUGUACCCCAGGAUGCUGCCACCAUCCCCAGCUCAGCCAUGCAGGCCCCAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.70 kcal/mol

Ensemble Metrics

Free Energy: -95.97

Frequency: 0.0010

Diversity: 51.26

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.(((((....)))))......((((....(((((.....((....))....)))))....))))........((((((((((..........((((((((((((.........(((((..((.((....((....))....))))..)))))...))).)))))))))..))))))))))......(((((.......)))))....(((((........(((((((((((((...)))).....))))))...)))......))))).........(((((.(((((....((.(((.......))).))))))))))))..........)))((..(((.....)))......))

Thermodynamic Ensemble Prediction

(((.(((((....)))))......((((....(((((,....((,...}}..,,)))))....))))........((((((((((..........((((((((((((.,.......(((((..,,.(((,..((....))..,.))))..)))))..,))).}))))))))..)))))))))).,,...(((((.......)))))....(((((........{((((((((((((...)))).....))))))...},,......))))).........(((((.(((((....((.(((.......))).)}))))))))))..........},}{,..(((.....)))......,)