Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SCMH1_0010200

Sequence Length

289 nt

GC Content

0.4913

CGACAACAAAAAUGACUUCUGGCGGCUGGUUGACUCAGCUGAAAUCCAGCCUAUUGGGAACUGUGAAAAGAAUGGGGGUAUGCUACAGCCACCUCUUGGAUUUCGGCUGAAUGCGUCUUCUUGGCCCAUGUUCCUUUUGAAGACGCUAAAUGGAGCAGAGAUGGCUCCCAUCAGGAUUUUCCACAAGGAGCCACCAUCGCCUUCCCACAACUUCUUCAAAAUGGGAAUGAAGCUAGAAGCUGUGGACAGGAAGAACCCUCAUUUCAUUUGCCCAGCCACUAUUGGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-85.90 kcal/mol

Ensemble Metrics

Free Energy: -91.50

Frequency: 0.0001

Diversity: 83.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

(............).(((((((.((((((.....((((((((((((((.((....))...((......))...((((((..((....)).))))))))))))))))))))..((((((((..((........))....))))))))(((((((((..(((.(((((((.....(((...)))....)))))))......(((..(((((.(((((.....((....))......))))).)))))..))).......))).))))))))).)))))).))....)))))

Thermodynamic Ensemble Prediction

,...........,}.(((((((.((((((.....((((((((((((((,((....)),..,,......,,...((((((..((....)),})))})))))))))))))))..{{{(((((,,({.,,,,.,,||,,,,|||||}}},,,,,((((..(((.(((((((.....(((...)))....)))))))...}}.|||}}{{{{{.{{|||}|},,,.,},,})...||,})))),)))))..})),,},..,))}.})))))}}}.)))))).))....)))))