Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SCMH1_0010700

Sequence Length

223 nt

GC Content

0.4798

AGGAGAGAGAGAGAGACAGCUUACGCCAUUAUUUCUACUAAUCAGAGACUUUUAGUACUUUCACUAAUUUGCUACUGCUAACUAAAAGGCAGAGCCAGGUGUACAGGAUGGAACAUGAAGGCGAACUAGGAACAUGACCACUGAAGCACAGCAUCACAGGGAGACAGUUAGACCUUUGGAUAACUGCAGGCGGGCCUGACUGACGUCAGGCCCUCCGCAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-54.30 kcal/mol

Ensemble Metrics

Free Energy: -58.57

Frequency: 0.0010

Diversity: 52.72

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((..(((((....((....)).....)))))(((((..........))))).))))).))..(((((..(((((........))))).(((..((((.(......).))))...)))...............((..(((.((...)).)))..))....((((((..(....)..))))))..((.(((((((((....))))))))).)))))))..

Thermodynamic Ensemble Prediction

((((((({{((({{,...((....)).....))))|{((({..........))))).))))).))..{((((,.(((((........))))).|{,..((((.{,{,.{{{..{||{..,,|......,...}}}}.||}}||..||}}.)}.||,..|}..,.((((((..(,...),.))))))}.((.(((((((((....))))))))).))))))}..