Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SCMH1_0014000

Sequence Length

250 nt

GC Content

0.3760

AGAGUUUCAAUCUUGUUGCCUGGGCUAGAGUGCAAUGGUAUGAUCUUAGCUCACCACAACCUCCACCUCCCAGGUUCAAGCAAUUCUCCUGCCUCAGCCUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUGUCAGAAGUCAGAGCAAGGUAUUGGUGGAUCCAGGGAUAAAUCCCAAACUUCUUAACCCCUAGACCGGUUUUUAGUCCAUUGACUAUGCAGCCUAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-39.00 kcal/mol

Ensemble Metrics

Free Energy: -43.41

Frequency: 0.0008

Diversity: 61.93

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.......)))(((....((((((..(((.((((((..(((.......((((((..((((....(((..(((((...(((.......)))...)))))...................................................((.(....).)))))..))))..)))))).....((((....))))((((((((........)))..))))))))..)))))))))....)))))))))

Thermodynamic Ensemble Prediction

(((.......)))((({{,.((((((,{(({,({,{{|,.|{,,,.,,}}}||,{,..,{{({{{{(.,{{(((((.,.(((.......)))...)))))..................................................,((,{......,,)}}},})),..,)))))}....((((....)))).,,,,{{{....,...}}}..|}}},.||{{|,,,,))))}.,.))))}}}})