Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SETDB1_0007700

Sequence Length

600 nt

GC Content

0.5083

AGUUACUGAAAGCUCUCGAAAUUACGGUUACAAUCCUUCUCCUGUGAAGCCUGAAGGACUUCGCCGCCCACCUAGUAAGACUAGUAUGCAUCAAAGCCGAAGACUCAUGGCUUCUGCUCAGUCCAACCCUGAUGAUGUCCUGACACUGUCCAGCAGCACAGAAAGUGAGGGGGAAAGUGGGACCAGCCGAAAGCCCACUGCUGGUCAGACUUCGGCUACAGCGGUUGACAGUGAUGAUAUCCAGACCAUAUCCUCUGGCUCUGAAGGGGAUGACUUUGAGGACAAGAAGAACAUGACUGGUCCAAUGAAGCGUCAAGUGGCAGUAAAAUCAACCCGAGGCUUUGCUCUUAAAUCAACCCAUGGGAUUGCAAUUAAAUCAACCAACAUGGCCUCUGUGGACAAGGGGGAGAGCGCACCUGUUCGUAAGAACACACGCCAAUUCUAUGAUGGCGAGGAGUCUUGCUACAUCAUUGAUGCCAAGCUUGAAGGCAACCUGGGCCGCUACCUCAACCACAGUUGCAGCCCCAACCUGUUUGUCCAGAAUGUCUUCGUGGAUACCCAUGAUCUUCGCUUCCCCUGGGUGGCCUUCUUUGCCAGCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-166.20 kcal/mol

Ensemble Metrics

Free Energy: -178.06

Frequency: 0.0000

Diversity: 226.46

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((((..((((..........((((.....((((((..((....))...))))))....)))).....(((((...)))))...((.....((((((((..(((.(((.((...((((.......)))).)).))).)))..(((.((((((((((.....)))...(((....(((......)))....))).))))))).))).))))))))...))))))..)))))))(((((.......)))))..(((((...(((((.....((((.(.(((...(((((.((((....(((((.(((((((((....)))..............(((((((((((((((..........)))))..))))................))))))(.((((((((.(((...(((....(((((....)))))..)))....((.(((((((((((....)))))..)))))).))((((.........))))....((((.((.((..........)).)).))))...))).)))))))).)..).))))))))))...)))).)))))...))).).))))..)))))...)))))...

Thermodynamic Ensemble Prediction

{(,.,{{{..,,,..,,{......}}||.....((((((..{{....}}...))))))....((((((({.(((((...)))))...{((,,,,((({({,{..,..,||}}},,))|{{({,...,,|||,,|||||{{{,{{.((({{({{{,{({{.....))}.,|({{,.,{({{{{{{{{|,|....,,,.),)))))})||,||||||||.}}},|||||}}}|}}|||,,|||((((,,,,,{{,{{|}}.,,,,.}})}|}}},,||||.{{{,.,({{{,.{{{{.,,,{{{{,.{({{((,({,.{{{{|,,......,..,.,||{|||||{{{{{,........{{{{{|||{{{,.......,},,}}..,,}))||||(.{{{{{{{|,(({,|,||{....(((((....)))))..||||...{{.,{{{|||||{{...,)))))..}})})}.),|(((.........)))}...,((((.((.,{..........)}.)).)))),..))).)))))))),}}.),))||||||,,..}))))},,,))}},)))},))))))))...}}{{|....))}