Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SETDB1_0008000

Sequence Length

301 nt

GC Content

0.5083

GUCCAAUGAAGCGUCAAGUGGCAGUAAAAUCAACCCGAGGCUUUGCUCUUAAAUCAACCCAUGGGAUUGCAAUUAAAUCAACCAACAUGGCCUCUGUGGACAAGGGGGAGAGCGCACCUGUUCGUAAGAACACACGCCAAUUCUAUGAUGGCGAGGAGUCUUGCUACAUCAUUGAUGCCAAGCUUGAAGGCAACCUGGGCCGCUACCUCAACCACAGUUGCAGCCCCAACCUGUUUGUCCAGAAUGUCUUCGUGGAUACCCAUGAUCUUCGCUUCCCCUGGGUGGCCUUCUUUGCCAGCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.10 kcal/mol

Ensemble Metrics

Free Energy: -84.38

Frequency: 0.0000

Diversity: 114.83

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((..((((((((((((((((............(((((((((((((((........(((((((.(((.........)))))..)))))(((((.......))))))))))).....(((((....)))))..(((((.........))))).)))))))))............))))..))))))(((((..((((((.............(((((((......))).))))..))))))..)))))((((((....))))))....))))))...))))((((.......))))....

Thermodynamic Ensemble Prediction

({,{,..(,,({((((,(((({{,......,..,.,{{(({{{{({{{{,......,.(((|({(,||{.........,..}}..},))){{||{.|||||,||||||||}||{....(((((....)))))..|||{,..{,.,,|{|||||,|,,,,))))),,}}}},},))||||..}}||{..|||{...,((((.((..........,,,||{|,.},,,}},}})}),,)}}))|,.,},,,((((((....))))))....,)),))}},))))||||,,...,,)))}.),,