Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0006300

Sequence Length

250 nt

GC Content

0.3400

GUUGGAAUUUAUCUUUUGGAAGCUGGCCUAGCAAAACUAGACUUCUUGAGUGAUGCAAAUUCAAGAAUGAAAAAGUUCAAUCAGCUCAUGAAGAAAGUAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUAUCAUUGAAGCAACUCAUGUUCUCUUGGUGGAGCCCAUAUUGAACCCUGCCCAUGAGCUUCAGGCCAUAGGGAGGGUGCACCGAAUUGGACAGACAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-43.70 kcal/mol

Ensemble Metrics

Free Energy: -48.41

Frequency: 0.0005

Diversity: 27.97

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.((((.(((((..((.(((((.((((.....))))..(((((((((.......)))))))))((((....)))).)))))))..)))))))))....................................................((((((..((((((.....)))).)).)))))).........((.(((((.((((((.(((...)))))).)))))))).)))))).(((......))).

Thermodynamic Ensemble Prediction

.((((.,{{{.(((((..(,{(((({.((((.....))))..(((((((((.......)))))))))((({....}))).,))))))..))))),}}}....................................................((((((..({{({(,,...}))),}}.)))))).........{{.(((((.((,(((.(((...)))))).)),))))).)})))).{((......))}.