Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SLIT1_0000300

Sequence Length

199 nt

GC Content

0.4271

GUGUGUCUUGGAUGGAGAACCCGGUGGAUAAUGCCAAGAAGUCAGGAGCUUGGAGAGGGGGGCCCAAGGUUAAAGAUAUUGACCAUGACAAGUAAUAAAAAAAUAGCAUUUCUCUUCCCCUGUUCUGUCUCACUUGUGAAUUCUUGAGGAAACUUGAUCCUUUUCUUUUCUAGACCCAGUAAGCUAGUAGAAUGUGUGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.90 kcal/mol

Ensemble Metrics

Free Energy: -42.42

Frequency: 0.0001

Diversity: 45.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((.((((.(((.((((((...(((.((...(.(((((((.(((.(((...(((.(((((((.....((((((.....))))))..((.((((..((......))..)))).))))))))).))).......))).))).)))))).).)...)).))).)))))).))).)))).))....((..((...))..))..

Thermodynamic Ensemble Prediction

.((.((((.(((.((((((...(((.((...{.(((((((.(((.(((...(((,(((((({..{{.((((((.....)))))).}|...,({..{.......},,.,,,,....}))))).)))}..},..))).))).)))))).).}...)).))).)))))).))),)))).))....((........,,,}}..