Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMYD3_0004300

Sequence Length

214 nt

GC Content

0.5374

UAUCUCUUUGCUCAAUCACAGCUGUGACCCCAACUGUUCGAUUGUGUUCAAUGGGCCCCACCUCUUACUGCGAGCAGUCCGAGACAUCGAGGUGGGAGAGGAGCUCACCAUCUGCUACCUGGAUAUGCUGAUGACCAGUGAGGAGCGCCGGAAGCAGCUGAGGGACCAGUACUGCUUUGAAUGUGACUGUUUCCGUUGCCAAACCCAGGACAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-55.30 kcal/mol

Ensemble Metrics

Free Energy: -59.89

Frequency: 0.0006

Diversity: 74.33

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..(((((((((...(((((((.(((..((((..((..(......)..)).))))...)))(((..((((....))))..)))..(((.((((((.(((((......)).))).)))))).)))..)))).)))..)))))))))(((..((((((((((......)))..)))))))....))))((...((((((....)))...)))..))

Thermodynamic Ensemble Prediction

({..,,,,||(({{{((((((,{(,.....}}.||||.,|}}}}{({{{..{(({.....,{{(,{((((.,,|||||..|,,..(((.((((((.(((((......)).))).)))))).))).,)))}.},,.}))))))),|{{.((((((((({{{.,{...|||,.,.,},,,....,},,)))}))))),}}}....)}},))))}))