Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SNCA_0000700

Sequence Length

415 nt

GC Content

0.5012

UGUGGUGUAAAGGAAUUCAUUAGCCAUGGAUGUAUUCAUGAAAGGACUUUCAAAGGCCAAGGAGGGAGUUGUGGCUGCUGCUGAGAAAACCAAACAGGGUGUGGCAGAAGCAGCAGGAAAGACAAAAGAGGGUGUUCUCUAUGUAGGCUCCAAAACCAAGGAGGGAGUGGUGCAUGGUGUGGCAACAGUGGCUGAGAAGACCAAAGAGCAAGUGACAAAUGUUGGAGGAGCAGUGGUGACGGGUGUGACAGCAGUAGCCCAGAAGACAGUGGAGGGAGCAGGGAGCAUUGCAGCAGCCACUGGCUUUGUCAAAAAGGACCAGUUGGGCAAGAAUGAAGAAGGAGCCCCACAGGAAGGAAUUCUGGAAGAUAUGCCUGUGGAUCCUGACAAUGAGGCUUAUGAAAUGCCUUCUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-114.40 kcal/mol

Ensemble Metrics

Free Energy: -122.31

Frequency: 0.0000

Diversity: 86.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((................)))))......)((((.(((.((..(((((.(((((..(..(((((((....((((((((......(((......)))........))))))))....)))...(((((....))))).....((((((...((((.........))))((.((.(((.((.....(((((....)).)))....((..((.((...((((.....))))...)).))..)))).))).)))).(((((((((.((((((..(..((((......))))..)..)))))).))))(((......)))....)))))............))))))(((((((.......(((...)))....))))))).))))..).....))))).)))))..)))))))))

Thermodynamic Ensemble Prediction

((((((.,{,.,,....}.},.))))}.....,)((((.({((((..(((((.(((((..(..(((({((,,.,((((((((,.....(((......))),,.,}...})))))}}....,}}...{((((....|)))}.,,,.((((((....((,.....},..}},|{{.{(.(((.((,.,..{{(((....)}.))}....,{..((.((...((((.....))))...)).))..}))).))).)))),(((({{{((.((((((..(..((((......))))..)..)))))).))}}(((......)))....}))))............))))))(((((((.......({{...}}}....))))))).))))..).....))))).)))))..)))))))))