Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SNX29_0008000

Sequence Length

376 nt

GC Content

0.4814

AUGCCAAAUGCAAAAAGGAGCGGAAGAAGAAAAAGAAAGUGACCAACAUAAUCUCAUUUGAUGAUGAGGAAGAUGAGCAGAACUCUGGGGACGUGUUUAAAAAGACACCUGGGGCAGGGGAGAGCUCAGAGGACAACUCCGACCGCUCCUCUGUCAAUAUCAUGUCCGCCUUUGAAAGCCCCUUCGGGCCUAACUCCAAUGGAAGUCAGAGCAGCAACUCAUGGAAAAUUGAUUCCCUGUCUUUGAACGGGGAGUUUGGGUACCAGAAGCUUGAUGUGAAAAGCAUCGAUGAUGAAGAUGUGGAUGAAAACGAAGAUGACGUGUAUGGAAACUCAUCAGGAAGGAAGCACAGGGGCCACUCGGAGUCGCCCGAGAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-99.80 kcal/mol

Ensemble Metrics

Free Energy: -106.60

Frequency: 0.0000

Diversity: 98.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((.....)))....((.((.................))..))..(((..(((((((....)))))))...)))..(((....))).((((((((((....))))))....((((((((((.(.((.(((.....))).)).).))))))))))........))))(((((((...((.(((((..((((.(((((...)).))).)).))(((...((.(((......((((((((((......))))))))))......))))).)))((((((.....))))))...........((........))...(((((.((........)))))))..)))))..)).)))))))..(((((......)))))..

Thermodynamic Ensemble Prediction

.(((.....}}}..,,((.(({{,..............{{..,,..|,,..{((((((....)))))),...,}},,{{,..|||}||{,{{((((((....))))))....((((((((((.(.((.(((.....))).)).).)))))))))).....,..,)))||||||{...((,((((({{(((({(((((...,|..,|{{{{{{((....({,,{{.....,||{|{{|||,}}}}}},)}})))))),}}}}.)),,,.,,(((((((.....))))))},,,,,....{{(,.,,....,|...{{{{{.|{........)))))))..}}}}}..}).}))))))..(((((......)))))..