Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SNX29_0012800

Sequence Length

330 nt

GC Content

0.4667

GAAGCCUGUGUUUAUGGAUGAGAGGAGGGGAGGAAGAGAGGGGUUCUUUCACUAGAAGAAGAGUUGCUGUAGUGGACAUGGUAUUAUCACUAGGCUGCUGGCAAAAGGCACCAGAGCUGCCUCUUGACUUUCUAGGUAUGUAGAGAGAACGAGGUGCUCAAAGUCCAACUGAAGAAAUAUGUAGGAGCUGUCCAGAUGCUGAAAAGAGAAGGUCAAACAGCUGAAGUGCCAAAUCUUUGGAGUGUUGAUGGAGAAGUUACAGUAGCUGAACAGAAGCCGGGAGAAAUUGCUGAAGAACUCGCAAGCUCCUACGAAAGAAAGCUCAUCGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.40 kcal/mol

Ensemble Metrics

Free Energy: -88.30

Frequency: 0.0000

Diversity: 62.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((....)))).(.((((((...((.(((((((........))))))).)).........(((.((.((((((((.((((......))))((.((((.......)))))).((((.(((((....(((((((......)))))))...)))))))))...)))).)))).)).)))..(((((((((((.(((.(((((.((.......(((((.((.((((((........))))))..))))))).......)).))))).))).)).......(.(((...((....))...))).).))))))))).........)))))).).

Thermodynamic Ensemble Prediction

.(({(....}))}.{.((((((...|{|{({((((........))))))).}}.........{{,.((.((((((((.((((......)))}((.((((.......)))))).((((.(((((.,..(((((((......))))))).,.)))))))))...)))),,))).))..}}..(((((((((((.(((.(((((.{{.......(((({,({.((((((........))))))..))))))).......}}.))))}.))).)).......(.(({...{{....},...))).).})))))))),........)))))).}.