Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0000600

Sequence Length

271 nt

GC Content

0.4391

GGGAAAUAUCAGAAGCAUCAAUCCCUUGAAGCAGAGGUGCAAACAAAAUCAAGACUCAUGUCUGAACUGGAAAAAACAAGGGAAGAACGAUUUACCAUGGGUCAUUCUGCCCACGAAGAAACGAAGGAAGGGCUAUGUCUCACUGGAGGACUAUACUGCUUUCCUGAUUGACAAGGAGUCAGAAAACAUCAAGUCCAGUGAUGAAAUAGAGAAUGCCUUCCAAGCCCUGGCAGAGGGCAAGUCAUAUAUUACCAAAGAAGACAUGAAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-67.90 kcal/mol

Ensemble Metrics

Free Energy: -71.39

Frequency: 0.0034

Diversity: 24.71

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.................))))(((..(((....)))...............((((((((....(((.........(((.((((.((((((...)))))).)))).))).((......))..((((((.((((.((((((((((.((.....(((..(((((........))))).)))......))...)))))))).)).))))......))))))..(((((.....))))).............)))....))))))))..)))

Thermodynamic Ensemble Prediction

((((.................))))(((..(((....)))...............((((((((....(((.........(((.((((.((((({...}))))).)))).))).,,......,|..((((((.((((.((((((((((.{{.....(((..(((((........))))).)))......}}...)))))))).)).))))......))))))..(((((.....))))).............)))....))))))))..)))