Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0001200

Sequence Length

165 nt

GC Content

0.4545

GAACGGGAGCAGGAGCUGCAAAAGGAAGAGGCAAGACAGGUCAAGAACUUUGAGAUGUGUCAGGAGUUUGAACAGAAUGCCAGUACCUUCCUUCAAUGGAUCCUGGAAACCAGAUCAUUGCUCAAAGAAACAGGAACUCUGGAAUCUCAGCUGGAAGCAAAUAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-27.80 kcal/mol

Ensemble Metrics

Free Energy: -32.71

Frequency: 0.0003

Diversity: 47.90

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(.(((....))).)..(((((((..((..((((.(((...........))).)))).((.((((.....)))).)).))..)))))))((((((...((((...)))).)))))).....(((..(((.....)))...)))..(((...))).......

Thermodynamic Ensemble Prediction

....,(.,(({{.,,||,}..(((((((.(((,.,,{{.{((,.{,,,,{|{,,,,.},)),||,||||,....},,)})).....))))))),,,{|{{|||(((...))})}))}|||{{...{({..(((,...,)))...)))..|||...,)),......