Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0003600

Sequence Length

360 nt

GC Content

0.4917

GCAGAGACAUUGCUGGCCAUGAAAGAUCAGGCCAGGGACUUGGCUUCAGCAGGAAACCUACUCAAGAAGCAUCAGCUAUUGGAGAGAGAGAUGUUGGCUCGAGAGAAUGUGCUGGAUAUGGCAGAGAAGCUGAAAGACAAGGCUGCUGUGGGGCAAGAGGAGAUCCAGUUGCGGCUGGCUCAGUUUGUUGAACACUGGGAGAAGCUCAAAGAGUUGGCCAAGGCCCGAGGACUUAAGUUGGAAGAAUCCCUAGAAUACUUGCAAUUCAUGCAGAAUGCUGAGGAAGAGGAAGCUUGGAUCAAUGAAAAGAAUGCUUUGGCUGUCCGAGGAGAUUGUGGAGAUACAUUAGCUGCUACUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94.50 kcal/mol

Ensemble Metrics

Free Energy: -102.10

Frequency: 0.0000

Diversity: 111.68

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((.((((..(((((.(((....))))))))(((.(((((((.(((((......((.(((....(((....)))....))))).....)))))((((..(((..(.(.((((...((...((.(((((((.......((((((..((((...........))))...))))))...))))))).))...)))))).).)..)))...)))).))))))).)))...((.(((((((.......(((.(((.....(((((.....)))))....))).)))......))))))).)).........))))))))).(((....((.((...(((......)))...)).))...)))

Thermodynamic Ensemble Prediction

.(((((.((((.((((((.(((....))))))))).,.((((,(((((((({....,((.(((.{{.(((,,{.}||.,,.,,},,.,.},}}||..}||,}|,,..{.{||||....|}}|}.}...|||,,..,.,.,}}))}))},}}},|||}....{{{||{{{|,|.,((..((((((,{,{,..,..{{{{{,,{.,||({,.|||||{||,...)))....}}}}|..,||},..,..|||}|||....,{((((.....)))))...)))))),.}}..,.}))}}))})).........))))))))).(((....((.((...(((......)))...)).))...)))