Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0004100

Sequence Length

233 nt

GC Content

0.4592

GGAUCUGCAGAACUGGAUCAGUAGCAUUGGUGGCAUGGUAUCAUCACAGGAGCUGGCCGAAGACUUAACUGGCAUAGAGAUCUUGCUGGAGAGACAUCAGAGGACUUAAGUUGGAAGAAUCCCUAGAAUACUUGCAAUUCAUGCAGAAUGCUGAGGAAGAGGAAGCUUGGAUCAAUGAAAAGAAUGCUUUGGCUGUCCGAGGAGAUUGUGGAGAUACAUUAGCUGCUACUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-50.40 kcal/mol

Ensemble Metrics

Free Energy: -55.53

Frequency: 0.0002

Diversity: 62.26

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((........)))))(((((((......(((..(((((.((((((((...((((((((.(((..((((((.((....)))))))).)))...(((...((.(((((((.......(((.(((.....(((((.....)))))....))).)))......))))))).))..)))........)))))))).)))........))))).)))))..).)))))))))...

Thermodynamic Ensemble Prediction

.(((((,......,)))))((((((,..,{{{((,..(((((.(((((({,.{{((((((((.{{{..((((((.{{....||}))}}}.,||...(((..,{(,(({((((.......(((.{((..,.{(((({.....})))).,,.))),))}......})))))).))..)}}........)))))))),))).......,))))).)))))..}.)))))))))...