Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0007000

Sequence Length

244 nt

GC Content

0.4918

GGAUCUGCAGAACUGGAUCAGUAGCAUUGGUGGCAUGGUAUCAUCACAGGAGCUGGCCGAAGACUUAACUGGCAUAGAGAUCUUGCUGGAGAGACAUCAGAUGUUCCAGGGGAACUGUGAUCAAGUUGAGAGCUGGAUGGUGGCACGUGAGAAUUCCCUGAGGUCAGAUGACAAAAGUUCCUUAGACAGUCUGGAGGCUUUGAUGAAGAAACGGGACGAUUUGGACAAAGCAAUCACUGCCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-58.50 kcal/mol

Ensemble Metrics

Free Energy: -64.05

Frequency: 0.0001

Diversity: 45.80

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((.....(((.(((((..(..((((((.......))))))..)..))))))))....((((((((((((((...((((.(((((...((((...))))))))))))).))))).)).))))))).((((.....))))..)).)))..)))(((.((.(((.(((.......(((..(((..((((.(...((((...))))...).))))..))))))........)))))))))))

Thermodynamic Ensemble Prediction

(((((({(...,,(({.{||||.,|..{{{({{,.,,.,,|||||},,|..}||}}}},....((((((((((((((...((({.(((((...{(({...})))))))),))).))))).)),})))))).{|||,,,},))})..}),)))..)))(((.((.(((.(((.......(((..{{,..((((.(...((((...))))...).))))..)},)))........)))))))))))