Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0007300

Sequence Length

367 nt

GC Content

0.4687

GAUCAGGUGGAUAUCCUUACAGACCUGGCUGCAUAUUUUGAAGAAAUAGGCCAUCCUGAUUCUAAGGAUAUAAGGGCAAGGCAAGAGUCCUUGGUAUGCCGAUUUGAAGCUCUGAAAGAGCCACUGGCCACCCGAAAGAAGAAGCUCUUAGACCUUCUCCAUCUGCAGCUGAUUUGUAGAGACACAGAGGAUGAGGAGGCCUGGAUCCAAGAGACUGAACCCUCAGCUACUUCCACCUACCUUGGAAAGGACCUGAUUGCUUCCAAAAAGCUUCUGAAUAGGCAUAGAGUCAUCCUGGAGAACAUUGCCAGCCAUGAACCACGCAUUCAAGAGAUAACAGAAAGGGGAAACAAAAUGGUAGAGGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-86.70 kcal/mol

Ensemble Metrics

Free Energy: -94.54

Frequency: 0.0000

Diversity: 135.95

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((..((((((((((((...(((((...((((((...)))))))))))..)))....)))))))))...((((.(.((((....)))).).))))........(((((...)))))....((((......((((......))))...((((.(((.((((...((.........))...))))))).)))).))))((((....((((.((((....)))))).))))))....((((...)))))))))))).(((((................((((.....((........))....)))).(((((......(.(.(((...........))).).)........)))))...)))))

Thermodynamic Ensemble Prediction

((((((((,.,{{(((((((((,..{((((,,,{(((({...|}}}}||||||,{||}....},)))))}}...((((.(.((((....)))).).)))).....,..(((((...}))))..,|||}|..,....,{,,|..|,)))}.},,|||}|,,.{{{||||,,..,}))))}}......,}))}}}|||||}})||||}},.{{((.((((....)))))).}||||,,||.||||||,,,},}})}}}}).{(({{......{{{,{{,,,.{((......(({{.{{{{.,,....},))}},,||},..,.,,|,|||,.,,,......},,.},}....,...,}))),,.)))))