Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0009400

Sequence Length

475 nt

GC Content

0.5116

UUCCCAACCUGCCUGUCCCCGAUAAGUGUCAGAAUGGAGCAGUCUCUCUGAAGACCACAUACUUUAAUCUCUGCAGCCACCAACAACAGGCUGCACCAGUGGAGGGAGUUGCUGGAGAACAAAGGGUCAUGGCUUUAUAUGACUUCCAGGCCCGCAGCCCCCGAGAAGUCACCAUGAAGAAAGGUGAUGUCUUAACGCUGCUCAGUUCCAUCAAUAAGGACUGGUGGAAGGUGGAAGCUGCUGAUCAUCAGGGCAUUGUCCCAGCUGUCUAUGUCAGAAGACUGGCCCACGAUGAGUUCCCGAUGCUCCCACAGCGGCGACGAGAAGAGCCAGGAAACAUCACCCAGCGCCAGGAGCAGAUUGAGAACCAGCAGGAGACAUGCUGGAAUGGAUUCAAGAGAAAAAGGCAGAAAACACUGGAGUGGAACUAGAUGAUGUUUGGGAGCUGCAGAAAAAGUUUGAUGAGUUCCAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-137.60 kcal/mol

Ensemble Metrics

Free Energy: -147.37

Frequency: 0.0000

Diversity: 153.25

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((....(((((((((...))).)).).)))...))))(.((((......))))((((.(((((....((((((((..((((((.((..((((.((((((..(((.(((((.((.(......((((((((......)))))))).....)))))))).)))((((.((((((.........)))))).))))....((((((...(((........)))((((((...((((...((((..((.((((.(((((((((.((((((.(((.....))))).))))...))))))....))))))).))...))))(((..........))).........))))...))))))))))))........((((((.......))))))......(((....)))............)))))).)))).......)).)).))))..)))))))).))))).)).))..........)

Thermodynamic Ensemble Prediction

(((({{..(((((({((...|||..|.}|||}..,|||}{.{(((,{,{{{||}|{{,,.,{{{{..,,(((((((({.,,,,,,.,,}}||||,{{{{{|,.(((.(((((.((.,......((((((((......)))))))}...,.))}))))),))}((((.((((((.,.......)))))).))))....((((((...(((........))}((((((...(((({..((((,,({.((((.(((((((((.((((((,(((.....))}}).))))...))))))...,))})))).}}...))))(((..,.......))).,......,))))...)))))))))))).}}}}},.(((((({....}.))))))..,}}.}||..,,}}...,}}}}}....||||||.}})}..}}.,.,}.,)}))))}})||,,,||,,,,}|.,,.},..}}}....})