Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0011500

Sequence Length

227 nt

GC Content

0.4626

GAAAACCAUCCUGACCUACCCUUAAUUCAGUCUAAGCAAAAUGAGGUGAAUGCUGCCUGGGAGCGCCUUCGUGGUUUGGCUCUCCAGAGACAGAAAGCUCUGUCCAAUGCUGCAAACUUACAACGAUUCAAAAGGCUCUUCUAAAGAAGCAUGAGGCCUUUCUAUUAGAUCUCAAUUCAUUUGGAGACAGUAUGAAAGCUCUGCGGAAUCAGGCAAACGCCUGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-54.60 kcal/mol

Ensemble Metrics

Free Energy: -58.91

Frequency: 0.0009

Diversity: 53.96

Structure Visualization

Structure Prediction

MFE Structure Prediction

((......))(((................((((((.......(((((..(((((...((((((.((((((((((((((.(......(.((((((....)))))))......)))))))....))))......)))).))))))....)))))...)))))....)))))).....((((((((....))).)))))...((....))..(((((....))))).)))

Thermodynamic Ensemble Prediction

((......))(((......,,,,,.,,..((,{{{,,....,||||{..(((((...((((((.((((((((((((({{{....,,{.((((((....)))))),...}..}))))))....))))......)))).))))))..,.))))).,,|}|||{,,,||}|}|{{{,,,,,,,||{,}},})),),))),},}},...},..(((((....))))).)))