Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0011600

Sequence Length

437 nt

GC Content

0.4577

GGGAAAUAUCAGAAGCAUCAAUCCCUUGAAGCAGAGGUGCAAACAAAAUCAAGACUCAUGUCUGAACUGGAAAAAACAAGGGAAGAACGAUUUACCAUGGGUCAUUCUGCCCACGAAGAAACGAAGGACACUUUGCUGCAGAAGAUGUGGCCUCUAGGGUCAAGAGUUUGAACCAGAAUAUGGAGUCUCUCCGUGCUCGAGCUGCUAGGCGACAAAAUGAUCUUGAAGCCAAUGUCCAGUUCCAGCAGUACCUGGCUGACCUGCAUGAAGCAGAAACAUGGAUCAGAGAGAAGGAACCUAUUGUAGAUAAUACUAACUAUGGUGCUGAUGAAGAAGCAGCUGGGGCUCUUCUAAAGAAGCAUGAGGCCUUUCUAUUAGAUCUCAAUUCAUUUGGAGACAGUAUGAAAGCUCUGCGGAAUCAGGCAAACGCCUGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-115.70 kcal/mol

Ensemble Metrics

Free Energy: -123.53

Frequency: 0.0000

Diversity: 112.77

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.................))))(((..((((((.(.............((((....))))((((((((........((...((((..((.(((..((((((((((((...(((((...(....)...)))))..)))))....)))))))....))).))..))))...)).((.(((((((...))))))).)).........(((..(((.......)))..)))....))))))))((((........))))..((((.....))))......(((((....((((((..(((...(((.....)))........(((((..(..(((((.(((....))))))))..)..))))).))).))))))....)))))...((((((((....))).)))))).)))))).....(((((....))))).)))

Thermodynamic Ensemble Prediction

((((.................))))(((..((((((.{,,...,....,,.((((....))))||{{(({,........(((.((((.((((({...}))))).)))).))).........(((((....))))){{((({,...,}}||{{({..{|||{{{..,,|}||.}}.|,.,((((((...))))))|{||,{|||{|,.(((..(((.......)))..)))....}}}}}}}}((((,,...,,.))))..((((.....)))).....|||{((.,,.{{{{({..(({...((({......}}}.},,}}||{((..{..{{{||,|||,.,,))}}}}}}..},,)))}},)))})}}}}}.,,.}}}}||,.{{{{{{{{....))).))))),.)))))).....(((((....))))).)))