Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0012500

Sequence Length

244 nt

GC Content

0.4836

GAUCAGGUGGAUAUCCUUACAGACCUGGCUGCAUAUUUUGAAGAAAUAGGCCAUCCUGAUUCUAAGGAUAUAAGGGCAAGGCAAGAGUCCUUGGUAUGCCGAUUUGAAGCUCUGAAAGAGCCACUGGCCACCCGAAAGAAGAAGCUCUUAGACCUUCUCCAUCUGCAGCUGAUUUGUAGAGACACAGAGGAUGAGGAGGCCUGGAUCCAAGAGACUGAACCCUCAGCUACUUCCACCUACCUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-63.90 kcal/mol

Ensemble Metrics

Free Energy: -68.95

Frequency: 0.0003

Diversity: 65.35

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((...((((((((((((.(.(((((((......((((.....(((((((((.......))))).....((((.(.((((....)))).).))))........(((((...)))))....))))......((((......))))....))))......)))))))).))))).........))))))).....)))).))))((((((.((((....))))))............))))

Thermodynamic Ensemble Prediction

((((((((...((((((((((((.,,((((((({(((({..,|}}}}}(({{{{{||,....,.))))),....((((.(.((((....)))).).)))).....,..(((((...}))))...,}})}........{,{{,,|.||}}.}}.))))},..}|}))))))}.)))))}........})))))).....))))}})))((((((.((((....))))))............))))