Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0014000

Sequence Length

471 nt

GC Content

0.4544

GGGAAAUAUCAGAAGCAUCAAUCCCUUGAAGCAGAGGUGCAAACAAAAUCAAGACUCAUGUCUGAACUGGAAAAAACAAGGGAAGAACGAUUUACCAUGGGUCAUUCUGCCCACGAAGAAACGAAGGCCUUCCUGGAAAACGAGGAUCUGGGAAACUCACUGGGCAGUGCAGAAGCCCUUCUUCAGAAGCAUGAAGACUUUGAGGAAGCCUUUACUGCCCAGGAAGAGAAGAUCAUAACUGUAGACAAGACUGCAACCAAAUUGAUUGGUGAUGACCAUUAUGAUUCAGAGAACAUCAAGGCUAUCCGUGACGGGCUGUUAGCCCGGCGGGAUGCCCUACGUGAAAAGGCUGCCACUAGACGUAGAUUGCUGAAGGAGUCAUUGCUUCUGCAAAAACUGUAUGAGGACUCAGAUGACCUAAAGAACUGGAUCAACAAGAAGAAAAAGUUGGCAGAUGAUGAAGAUUACAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-123.10 kcal/mol

Ensemble Metrics

Free Energy: -133.70

Frequency: 0.0000

Diversity: 123.88

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....................))((((..(((....)))........(((.(((....))))))...........((.((.............)).))(((((((..(((..((......))..))).((((((((.........)))))))).((..(((((((((...((((..((((((((((..(.....)..)))))))))).)))))))))))))..)).............(((((......)))))(((((.....))))))))))))....((((((((..........(((.((((....((((((...))))))...)))))))((((((.....((...)).....))))))....((..(((.(((...(((((((((.....)))).)))).)...)))..)))..))..))))))))............((((..((.....))..)))).))))

Thermodynamic Ensemble Prediction

{(,.....,{.....,,,,..|||((((..(((....)))........((,{(((....)))))}..,,.......}},|||,,,,..,,{|{.,,.||||||{||||(((,.((......}}..}}},{(((({(,...,.,}},||||||,,.(({.((((((((({..((((..((((((((((.,(.....).,)))))))))).)))))))))))))..,}....{{((({{,.(((((......))))),{{{,.....,||||....}}},}}}}}}|||.{,.....}}..(((.{(((,{,.((((((...)))))),)})))))))((((((.....({...}}..,..)))))).{({(.{{((,{{,..,}.)))).)))}....,,,.,})),.}}}})))}}}))......|||}.|||,{...........))})})}}.}}}}}..,}},.}}}}