Sequence Details

BLAST PRIMER
Symbol
hsa_SPTA1_0015000
Sequence Length
395 nt
GC Content
0.4734
GUUGUGGAGAGCAGUGGGCCAAAGGUUUUGGAAACAGCAGAAGAGAUCCAGGAGAGGCGUCAGGAAGUGUUGACUCGGUAUCAAAGUUUCAAGGAGCGGGUCGCUGAGAGGGGUCAGAAGCUUGAGGAUUCCUAUCACUUACAAGUUUUCAAGCGAGAUGCAGAUGAUCUGGGGAAGUGGAUCAUGGAGAAAGUCAAUAUCUUAACCGAUAAGAGCUAUGAAGACCCAACUAAUAUACAGGUGAAGGAGUUAUGUGCUAAAGCAGAGAAGCUGACACUUUCCCAUCCUUCAGAUGCACCUCAGAUCCAGGAGAUGAAAGAAGAUCUGGUCUCCAGCUGGGAGCAUAUUCGUGCCCUGGCCACCAGCAGAUAUGAAAAACUGCAGGCUACUUAUUG

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-104.00 kcal/mol
Ensemble Metrics
Free Energy: -109.61
Frequency: 0.0001
Diversity: 93.22
Structure Visualization
Structure Prediction
MFE Structure Prediction
...((((....((((((.((...(.((((.(((((.........(((((((..((.((........)).))..)).)).)))...))))).)))).))).))))))....(((((....(((((((((((..((.....))..)))))))))))(((.((((..(((..((((((((((..((((((.....(((............))).....))))))...((..(((........)))...))((((.(.(((....))).)..))))..))))))))))....)))..)))).))).))))).((((((...(((...))).)))))).((((((.((((....))))))))))..((.((((..........)))).))))))......
Thermodynamic Ensemble Prediction
.{{.,...}}.(((((((((,,...,|||||,..{..,......{{(({{{,,({.((,|{.....}}.))|,||,|},,}|...||||,..,)),)}}})})||||...(((((....(((((((((((..((.....))..)))))))))))(((.((((..(((..((((((((((..(({(((.....,{{....{{,,....}}),..,.}}}))}...{(,.(((........)))...)){{{|.{.{{{....}|}.}..,)))..))))))))))....)))..)))).))).))))).((((((.,.{{,...}}).)))))).((((((.((((....))))))))))..((.((((..........)))).)),,,)}}}}}}
Back