Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0016100

Sequence Length

414 nt

GC Content

0.4903

GGGAAAUAUCAGAAGCAUCAAUCCCUUGAAGCAGAGGUGCAAACAAAAUCAAGACUCAUGUCUGAACUGGAAAAAACAAGGGAAGAACGAUUUACCAUGGGUCAUUCUGCCCACGAAGAAACGAAGGCCCAUAUAGAGGAGCUACGCCACCUGUGGGACCUGCUGUUAGAGCUGACCCUGGAGAAGGGUGACCAGUUGCUGCGGGCCCUGAAGUUCCAGCAGUAUGUACAGGAGUGUGCUGACAUCUUAGAGUGGAUUGGAGACAAGGAGGCUAUAGCGACAUCAGUGGAGCUAGGUGAAGACUGGGAGCGCACCGAAGUUCUGCAUAAGAAAUUUGAAGACUUCCAAGUGGAGCUGGUAGCUAAAGAAGGGAGAGUUGUUGAAGUGAACCAAUAUGCCAAUGAGUGUGCCGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-106.50 kcal/mol

Ensemble Metrics

Free Energy: -115.03

Frequency: 0.0000

Diversity: 138.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

......((((((...(((...(((((((..(((....)))........(((.(((....))))))...........))))))).......((((((.(((((......)))))((......))..(((((((...(((..((((.(((.((((((((.(((((.((...((((((((((.....)))))...))))))).)))))))).....(((((...((..(((((....)))))..))((((......))))))))))).))).)))..))))..).)).)))).))).))))))...(((((((....((((.((((.....)))).))))..).)))))).)))...)))))).........((.(.(.((((((..(((......)))..)))))).).).))...

Thermodynamic Ensemble Prediction

.((..,,.(((...(({{,..(((((({..(((....)))........{(,{(((....)))))},,{{,......},,|||,,{{{.({(((,.,.|||||}.}}}}.))).,,......}}.((((((((,.,(.{{.((...))}.,))))))).)))(((.....))){.(((((.....))))).,,},||(((((.,((((({....(((((,,.((..(((((....)))))..)){(((......))))))))}....)).)})}.})))}}}.,,.{{{{{(((,({({...,{{{,,{||.}}}|,,|}||||,}...}}},.}}}}..,.|||||..}}..{|||.,}))))....,,}))},,}||||||..||...,}..,})}},,.))).},,.))...