Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0016200

Sequence Length

654 nt

GC Content

0.4817

GUUGUGGAGAGCAGUGGGCCAAAGGUUUUGGAAACAGCAGAAGAGAUCCAGGAGAGGCGUCAGGAAGUGUUGACUCGGUAUCAAAGUUUCAAGGAGCGGGUCGCUGAGAGGGGUCAGAAGCUUGAGGAUUCCUAUCACUUACAAGUUUUCAAGCGAGAUGCAGAUGAUCUGGGGAAGUGGAUCAUGGAGAAAGUCAAUAUCUUAACCGAUAAGAGCUAUGAAGACCCAACUAAUAUACAGGGGAAAUAUCAGAAGCAUCAAUCCCUUGAAGCAGAGGUGCAAACAAAAUCAAGACUCAUGUCUGAACUGGAAAAAACAAGGGAAGAACGAUUUACCAUGGGUCAUUCUGCCCACGAAGAAACGAAGGCCCAUAUAGAGGAGCUACGCCACCUGUGGGACCUGCUGUUAGAGCUGACCCUGGAGAAGGGUGACCAGUUGCUGCGGGCCCUGAAGUUCCAGCAGUAUGUACAGGAGUGUGCUGACAUCUUAGAGUGGAUUGGAGACAAGGAGGCUAUAGCGACAUCAGUGGAGCUAGGUGAAGACUGGGAGCGCACCGAAGUUCUGCAUAAGAAAUUUGAAGACUUCCAAGUGGAGCUGGUAGCUAAAGAAGGGAGAGUUGUUGAAGUGAACCAAUAUGCCAAUGAGUGUGCCGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-173.10 kcal/mol

Ensemble Metrics

Free Energy: -185.44

Frequency: 0.0000

Diversity: 183.72

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((.((..(.(((((((....(((((.......((((((..((((((((.((..(((..........(((((((.(.((..........))).)))))))((((......))))..(((((((((((..((.....))..)))))))))))..(((((..((((((((......))))))))........(((...(((((.....)))))....)))...(((............)))............)))))..(((((((..(((....)))........(((.(((....))))))...........)))))))...)))..)).)).)))))).)))))).......)))))...)))))))......)..)).))).))((..(((.(((((.((...((((((((((.....)))))...))))))).))))))))...(((((((((.............(((((((..((((((..(((...(((....)))....))).((((..((....))..))))....)))).))..)))))))((((.((((.....)))).))))......(((....)))))))).))))......((.(.(.((((((..(((......)))..)))))).).).)).))

Thermodynamic Ensemble Prediction

{(,(((..,,{(.(((((((....(((((.......((((((..((((((((.((..((({......,,{{((((({,(,{(...,,{,...|||,|}}}}}}{({{...,.,||}}..(((((((((((..((.....))..)))))))))))..|||||..((((((((......))))))))......,,|},.||{(||,...,.}},||{{{.{{{...(((............})),.....))}..})),))..(((((((..(((....)))........((,{(((....))))))..,........))))))).,.,)).})).)).)))))).)))))).......)))))...)))))))...,.,,.{||{}||,,|((,|(({.(((((,{{...{{{({(((((.....)))))...}}|||||,|}}|}|||,...,((((({{.((..(((((....)))))..)){(((......))}}}}}}}.}.,}}.}})}.}}||,,|.,,.{{{{,|({,({{,...,|||,,||}.}}}|{{|}||||,}...}},,.}}}}..,.|||||..,}..|||}}}.))))......((.(.(.((((((..(({......}))..)))))).).).)).,}