Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0016300

Sequence Length

698 nt

GC Content

0.4742

GUUCUAAACCUUUAGGAAAAAUGGAGCAAUUUCCAAAGGAAACCGUUGUGGAGAGCAGUGGGCCAAAGGUUUUGGAAACAGCAGAAGAGAUCCAGGAGAGGCGUCAGGAAGUGUUGACUCGGUAUCAAAGUUUCAAGGAGCGGGUCGCUGAGAGGGGUCAGAAGCUUGAGGAUUCCUAUCACUUACAAGUUUUCAAGCGAGAUGCAGAUGAUCUGGGGAAGUGGAUCAUGGAGAAAGUCAAUAUCUUAACCGAUAAGAGCUAUGAAGACCCAACUAAUAUACAGGGGAAAUAUCAGAAGCAUCAAUCCCUUGAAGCAGAGGUGCAAACAAAAUCAAGACUCAUGUCUGAACUGGAAAAAACAAGGGAAGAACGAUUUACCAUGGGUCAUUCUGCCCACGAAGAAACGAAGGCCCAUAUAGAGGAGCUACGCCACCUGUGGGACCUGCUGUUAGAGCUGACCCUGGAGAAGGGUGACCAGUUGCUGCGGGCCCUGAAGUUCCAGCAGUAUGUACAGGAGUGUGCUGACAUCUUAGAGUGGAUUGGAGACAAGGAGGCUAUAGCGACAUCAGUGGAGCUAGGUGAAGACUGGGAGCGCACCGAAGUUCUGCAUAAGAAAUUUGAAGACUUCCAAGUGGAGCUGGUAGCUAAAGAAGGGAGAGUUGUUGAAGUGAACCAAUAUGCCAAUGAGUGUGCCGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-184.60 kcal/mol

Ensemble Metrics

Free Energy: -197.87

Frequency: 0.0000

Diversity: 230.55

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((.(((((((((....((((((..((((((..((...))....))))))...(((((((....(((((.......((((((..((((((((.((..(((..........(((((((.(.((..........))).)))))))((((......))))..(((((((((((..((.....))..)))))))))))..(((((..((((((((......))))))))........(((...(((((.....)))))....)))...(((............)))............)))))..(((((((..(((....)))........(((.(((....))))))...........)))))))...)))..)).)).)))))).)))))).......)))))...)))))))((((..(.((...)))..))))(((.(((((.((...((((((((((.....)))))...))))))).))))))))....))))))...((..(((((....)))))..)).)))))))).)..)))))..(.....(((((((((..(((..((((((((.((((.............))))..)))))))).........(((........))))))..))).))))))......((.(.(.((((((..(((......)))..)))))).).).))..)

Thermodynamic Ensemble Prediction

(((({,,,(((((.(({,...{{,,,,..||||||}}||...||.{{,||,|||||.(((((((....(((((.......((((((..((((((((.{(,.((({......{,||{{((({{(,{(...,{{{,..,||,||}||}|{({{...,.,||}}..(((((((((((..((.....))..)))))))))))..|||||..((((((((......}))))))).......,||,.||{(|{,...,,}},||{{{.{{{...(((............})),.....))}..})),)}..{((((((..(((....)))........((,{(((....))))))..,,.......))))))}.}.,)).})).)).)))))).)))))).......)))))...))))))).,,{,{{.(({,.|||.|||}}||{.|||((,{{...{{|({(((((.....)))))...)}|||||,|}}|||||,...,{((({...((..(((((....)))))..)){{{{......))})))))}.}..)).)})|.}))),,}.|,.((({{{((,(((,...,||,,,,|}.)}}|,,|}}|||,}...,,,..||||..,.|||||..,},.{|||.,,))))......{|,|.{.{{((({..{{|...,..}}}.,)}}}}}.),),)).,)