Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0016600

Sequence Length

366 nt

GC Content

0.4536

GUUGUGGAGAGCAGUGGGCCAAAGGUUUUGGAAACAGCAGAAGAGAUCCAGGAGAGGCGUCAGGAAGUGUUGACUCGGUAUCAAAGUUUCAAGGAGCGGGUCGCUGAGAGGGGUCAGAAGCUUGAGGAUUCCUAUCACUUACAAGUUUUCAAGCGAGAUGCAGAUGAUCUGGGGAAGUGGAUCAUGGAGAAAGUCAAUAUCUUAACCGAUAAGAGCUAUGAAGACCCAACUAAUAUACAGGGGAAAUAUCAGAAGCAUCAAUCCCUUGAAGCAGAGGUGCAAACAAAAUCAAGACUCAUGUCUGAACUGGAAAAAACAAGGGAAGAACGAUUUACCAUGGGUCAUUCUGCCCACGAAGAAACGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-82.10 kcal/mol

Ensemble Metrics

Free Energy: -90.03

Frequency: 0.0000

Diversity: 109.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((..((.(((((.(((..(((.(((.......(........(((((...((((((...((.((.((((....(((((...(((((((((((((...)))).....(.(((....(((((((((((..((.....))..)))))))))))..))).)..((((((((......)))))))).((.....))..((((......)))).(((((.(((...(((............)))......)))..))).))....)))))))))...)))))........)))).))))))))))...)))))........).......)))...))).))).)))))))..))))))..........

Thermodynamic Ensemble Prediction

.((((((...,.,{{{{.(((,..,,||||}...,.{(((((..((((((((.{(,,((({..,..,{.{((({{{,{({((...{{{{,,,{||{||,}|}}||{{...,.,||,,..(((((((((((..((.....))..)))))))))))..|||||..((((((((......)))))))).......,|},.|,{(|{,...,,)},||{{{.{{{...(((............})),.....))}..})),))..{{|||||,,||{..,,)))........|{||(((....))))},.,}},......}}}}}}}.,.,}}.,)}.)).)))))).))))))))))},....,,....