Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPTA1_0016700

Sequence Length

410 nt

GC Content

0.4439

GUUCUAAACCUUUAGGAAAAAUGGAGCAAUUUCCAAAGGAAACCGUUGUGGAGAGCAGUGGGCCAAAGGUUUUGGAAACAGCAGAAGAGAUCCAGGAGAGGCGUCAGGAAGUGUUGACUCGGUAUCAAAGUUUCAAGGAGCGGGUCGCUGAGAGGGGUCAGAAGCUUGAGGAUUCCUAUCACUUACAAGUUUUCAAGCGAGAUGCAGAUGAUCUGGGGAAGUGGAUCAUGGAGAAAGUCAAUAUCUUAACCGAUAAGAGCUAUGAAGACCCAACUAAUAUACAGGGGAAAUAUCAGAAGCAUCAAUCCCUUGAAGCAGAGGUGCAAACAAAAUCAAGACUCAUGUCUGAACUGGAAAAAACAAGGGAAGAACGAUUUACCAUGGGUCAUUCUGCCCACGAAGAAACGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94.30 kcal/mol

Ensemble Metrics

Free Energy: -102.69

Frequency: 0.0000

Diversity: 126.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((...)))((((............((..(((((((((....(((((((.....)))))))........)))))))))..))........(((((...((((((...((.((.((((....(((((...(((((((((((((...)))).....(.(((....(((((((((((..((.....))..)))))))))))..))).)..((((((((......)))))))).((.....))..((((......)))).(((((.(((...(((............)))......)))..))).))....)))))))))...)))))........)))).))))))))))...)))))........(((.((((.((((((...)))))).)))).)))..........))))

Thermodynamic Ensemble Prediction

(((,,.,,(((((.(({,,..{,......}}))))}}}}.,,|(,((((.....}},||||.|||||,,,})))),....{(((((..((((((((.{(,,((({.....,{,{{(({({{{(,((...{{{{,,.|||,||,}|}}||{{...,.,||,,..(((((((((((..((.....))..)))))))))))..|||||..((((((((......)))))))).......,|},.||{(|{,...,,}},||{{{.{{{...(((............})),.....))}..})),))..{{|||||.,||{...,)))........{{|{(((....))))}}..},.......))}}}}}.|,}}}.}}}.)).)))))).))))))))}}......,))}.)