Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TCF25_0002200

Sequence Length

422 nt

GC Content

0.5284

AUAAACAUUGACGAUCUUGAGGAUGACCCUGUGGUGAACGGGGAGAGGUCUGGCUGUGCGCUCACAGACGCUGUGGCACCAGGGAACAAAGGAAGGGGUCAGCGUGGAAACACAGAGAGCAAGACGGAUGGAGAUGACACCGAGACAGUGCCCUCAGAGCAGUCUCAUGCAAGUGGCAAACUCCGGAAGAAGAAAAAAAAACAGAAAAACAAGAAAAGCAGCACGGGAGAAGCAUCGGAAAACGGACUAGAAGAUAUCGAUCGCAUCCUAGAGAGGAUUGAGGACAGCACUGGGUUGAACCGUCCCGGCCCAGCUCCCCUGAGCUCCAGGAAGCACGUUCUCUACGUGGAGCACAGACACUUGAAUCCAGACACAGAACUGAAAAGGUAUUUUGGUGCCCGGGCAAUCCUGGGGGAGCAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-108.50 kcal/mol

Ensemble Metrics

Free Energy: -115.46

Frequency: 0.0000

Diversity: 121.30

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(.(((.(..((((.(((((..((((((.....))))))....(((((((.....))...)))))(((..((((((((((.((.......(((((..(((((....))).(((.(((...(((.((.......)))))......))).)))...(((......))).....))..)))))........................................(((((..((((((....................)))).))(((((....)))))...........((((((((........)))))))))))))(((.((((((.(.((........)).).)))))).)))...........(((........))).....)).))))))))))..))).))))).)))).)))).)

Thermodynamic Ensemble Prediction

.....,.(((.(..((((.(((((..((((((.....))))))....(((((,{,,...,}.,,)))))(((..((((((((({.,{...,,..{(((({,{{(((....))).,,{.{{....{((.((,......}}}||...{,{((({|{{{{.{{,.,||,.|||..,,,}}...{|||.,.....................................,{||||..{{{(((,....|.............})})),}}{((((....)))))}}}}}...}},|||{{|||...,.,,,))))))})}))))(((.((((((.(.({........)).).)))))).))).,,|||,..,,|||........}}}...,})).})))))))))..))).))))).)))).)))).}