Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TCF25_0010700

Sequence Length

2339 nt

GC Content

0.6503

GCUCAUCGGAACCUGUCCCAGCUCCCUAAUUUUGCCUUCUCUGUUCCACUGGCGUAUUUCCUGCUGAGCCAGCAGACAGACCUCCCUGAGUGUGAGCAGAGCUCUGCCAGGCAGAAGGCCUCUCUCCUGAUACAGCAGGCGCUCACCAUGUUCCCUGGAGUCCUCCUGCCCCUGCUCGAGUCUUGCAGUGUGCGGCCCGACGCCAGCGUUUCCAGUCACCGCUUCUUUGGACCCAAUGCUGAAAUAAGCCAGCCCCCUGCCCUGAGCCAGCUGGUGAACCUGUACCUUGGGAGGUCACACUUUCUCUGGAAAGAGCCCGCCACCAUGAGCUGGCUGGAGGAGAACGUCCACGAGGUUCUGCAAGCAGUGGACGCCGGGGACCCAGCCGUGGAAGCCUGUGAGAACCGGCGGAAGGUGCUCUACCAGCGUGCACCCAGGAAUAUCCACCGCCAUGUGAUCCUCUCUGAGAUCAAGGAAGCCGUCGCUGCCCUGCCCCCGGACGUGACCACGCAGUCUGUGAUGGGGUUUGAUCCUCUGCCUCCUUCGGACACAAUCUACUCCUACGUCAGGCCAGAGAGGUACCUCCCUCCUUCCAGUUCCCACCUCCCAGCUCCCACCUCCCUCCUCCCAGUUCCCAGCUCCCAGCUCCCACCUCCCAGCUCCAACCUUCCAGCUCCCAGCUCCCACCUAGCAGCUCCCGGCUCCUGGCUCCCACCUCCCUCCUCCCACCUCCCACCUCCCAGCUCCCACCUCCCUCCUCCCACCUCCCACCUCCCUCCUCCCAGUUCCUACCUCCCAUCUCCCAGCUCCCAGCUGCCACCUCCCAGCUUCUGCCUCCCUCCUCCCAGUUCCCACCUCCCAGCUCCCACCUCCCAGCUCCCGCCUCCCUCAUCCUAGUUCCCACCUCCCAGCUCCCAGCUCCCUCCUCCCACCUCCCACCUCCCUCCUUUCACCUCCCACCUGCCACCUCCCGCCUCCCACCUUCCAGCUCCCGCCUCCCACCUUCCAGCUCCCGCCUCCCUCCUCCCAGUUCCCACCUCCCACCUCCCAGCUCCCACCUCCCAACUCCCUCCUCCCACCUCCCACCUCACCUCCCUCCUCCCUCCUUCCAAUUCCCACCUCCCAGCUCCCAGUUCCCACCUCCCAGCUCCCGCCUCCCACCUCCCAGCUCCUGCCUCCCUCCUCCCAGUUCCCAGCUCCCACCUCCCUCCUCCCGCCGCCUAGCUCCCACCUCCCAGCUCCCGCCUCCCACCUCCCAGCUACCGCCUCCCUCCUCCCAGUUCCCAGCUCCCACCUCCUACCUCCCAGCUCCCGCCUCCCACCUUACAGCCCCUGUCUCCUCCCUCCUCCCAGUUCCCAGCUCCCAGCUCCCGCCUCCCUCCUCUCACCUCCCCUGCCACCUCCUGCCUCCCUCCUCCCAGCUCCCACCUUCCAGCUCCCGCCUCCCUCCUCCAAGUUCCCACCUUCCAACCCCGCCUCCCUCCUCUCAGUUCCCACCUCCCAGCUCCCACCUCCCAGCUCCCUCUUCCCUCCUCCCAGUUCCCACCUCCCAGCUUCCUCCUCCCACCUUCUAGUUCCCACUUCUUUCCUCACAGUUCCCACCUCCCAGCUCCCAUCUUCCAGCUCCCAGCUCCCACCUCCCUCCUUCCAGUUUCCACCUCCCAGCUCCCACCUCCCACCUUCCAGUUCCCACCUCCUUCCUCGCAGUUCCCACCUCCCAGUUCCCACCUGCCAGCUCCCACCUCUUUCCUCGCAGUUCCCACCUCCCACCUUCCAGCUCCCACCUCCCAGCUCCCUCCUCCCACCUUCCAGUUCCCACCUCUUUCCUCGCAGUUCCCACCUCCCAGCUCCCGCCUCCCUCCUCCCAGCUCCCACCUCCCAGCUCCCACCUCCCACCUCCCAGCUCCCACCUCCCAGCUCCCACCUCCCUCCUCCCAGCUCCCACCUCCCGCCUCCCAGCUCCCACCUCCCGGCUCCCGCCUCCCAGCUCCCAGCUCCUGCCUCCCACCUGCCAGCUCCCAGCUCCCGCCUCCCUCCUCCCAGUUUCCACCUCCCAGCUCCCACCUCGCAGCUCCCAGCUCCCAGCUCCCACCUCGCAGCUCCCAGCUCUCUCCUGCAGCUCUGAGGUCAGGGCUUUGGGGCUCACAGGGACUGGCUGCCUCUUUCAGACCCAGAUGCUGAGAGAUGGGGCUCAGGGCUAAGUGGGUCUUUCCCCUCACAGGAAGGGAGAGGAGGAGAGGAACAGUGUUAUUUGGGGGUCACAGCUCUGCGUUUGCAGGCCACGUUCUUUCCCAUCUCCACCGAAUGUACAAGCGCUUGCGUGUCGGCCUCUGUGGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-458.17 kcal/mol

Ensemble Metrics

Free Energy: -497.01

Frequency: 0.0000

Diversity: 548.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((....)).)(((((.(((.........(((((((.((((((((((((((.((.....((((((...))))))....))...))..)))).)))))))).......)))))))(((((........(((((.(((((((((....((((((..(((((..(((..((....))..)))....((((.(.(((((.......((((((((((((...........)))))...)))))))......))).)).).))))...((((.((((((.(((((((((...((((((((..........((((...(((...........((((((((((((((((...((((((..(.((....)).).))))))((.((((((......((((.(((.((.(((....(((((.(((((......(((.(((.....((((((.............((((((.....).)))))((((.((((..(((((...(((((((((((((....))).)))))....))))).......(((((((.....(((..........)))......))).))))((((......))))...................((((........................))))...((((..........))))..........((((...))))........)))))...))))))))((......))....................................................................))))))...............((....(((((........)))))...))..........................((((..........))))...............................((((...)))).....................................)))))).))))).)))))............((....)).............((....))............................))).))))).))))..................................................................((((...((.......))...))))..................((....)).............)))))).)).....................((.(((((...........((....))............)))))..))....))))).))))...)))))))...........))))))).....))))))))...))))).......................))))))))))....)))).........................((........))............((((..........))))...........(((((((((...(((............(((((((((((((..............((((..........)))).............................................................................(((((..((((((.((((((((.((((....((((...............................))))...............((((((((.............((((.....................((((.((..............)).))))...................((((..........))))....................................((((.............((....))............((((..........((((.................))))..........)))).................((((.................))))..........(((....)))....((((...)))).)))).......)))).((((...))))...............................((((.(......).))))...((((((.(((((..((((((.((((..(((.......))).)))).))))))..)))))..))))))....))))))))(((..(((...)))..)))..)))).)))))))))))..)))....))))).((((((.......))))))))))))))).))))....)))..))))))))).....((.((((....))))))...............)))))..))))))...)))))))))))))))))))))).)))))

Thermodynamic Ensemble Prediction

(,((...,||.}{{{||,{{(,,,......{{,{{,,.{(((((((((((((.{,.....((((((...)))))),,}}}....},.,)))).)))))))),.{{{{{},|||||{((((........(((((.(((((((((....((((((..(((((..,,{,,((..,,||..|}|....((((.|.(((((.......((((((((((((...........)))))...)))))))......}}).)).,.))))...{{{|.((((((.((({{((.....,(((((((..........,,(({,,(((...........(((((((({(((((((..{,,,,,,{{(({.,,{,.{{,.|||||,|..(((({...,{,.{((({((..{({({(,...(((((.((((((......{{.(((.,...{(((.........{,,...((((({,....),)))))((({{((((..(((((...(((((((((((((....))).)))))....)))))..,...{(((((((.....(((..........)))...,..))),,)))|(((,.....,}},.....,|.....,......{{{{.................,|.....||||...||||..........}}}}..........{(({...))))........)))))...))))))))|||................................,,.........................................|,.................,{((,...|||||........}}||}...)).............,............{(({..........}))}...,,.............,............((((...))))..............................,,,,,.......),})))).))))),,.,,,,,,,,,||,...}}............,||....)}............,},.................,}}}}...,,..................................................................{(((...{{,......,,...}}}}...,,.............((....))....,,,,,..,}),..}})))),................,,.{,.{((((...........((....))............))))}..)),,,.,......,})}},}})))).................||{{...||{.{{{{....{((,...{|||.{{{{{{{,,,,....|,,...||||...})))...,,.....................{,........},............{(((..........}))}...,,...........,{{,..................,,,,,,,.,,,,,.,............((((..........}))}.................,|,...........}}}|.................||,....,|,...........||..,,,,,..{,{(((.{{{{{{{{.{(((,...||||.................,|............}}}}..................|,.............,,.((((......,......}}......||||.||..............,..}}}}...................((((..........))))..................|.................{{{(............,({....}}............{(((..........||||.................||||..........}))}.................{{{{..........{{.....|)),..........(((....)))....((((...|||}.||||.......,,||.{({{...}))}...,,.............,............{{{{........|,||}}...(((({{.(((({..{{{{{|.||||...|||,.....}})})))).})))))..))))}.,))))))....))))))))|||..(({...})}..}})..)))).)))})))))))..)))..,,))))).,,..........}))}}))))))))))).)))))}}})))}.,.,))))))}...,}}}{{||....))))),...............)))))..))))))...)))))))))))))))))))))),)))))