Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0006800

Sequence Length

445 nt

GC Content

0.4899

ACUUCAAAUCUCAACCUGAGCCAUCCCCAGUUCUUAGCCAGUUGAGCCAGCGACAACAGCACCAGAGCCAGGCAGUCACUGUUCCUCCUCCUGGUUUGGAGUCCUUUCCUUCCCAGGCAAAACUUCGAGAAUCAACACCUGGAGACAGUCCCUCCACUGUGAACAAGCUUUUGCAGCUUCCCAGCACGACCAUUGAAAAUAUCUCUGUGUCUGUCCACCAGCCACAGCCCAAACACAUCAAACUUGCUAAGCGGCGGAUACCCCCAGCUUCUAAGAUCCCAGCUUCUGCAGUGGAAAUGCCUGGUUCAGCAGAUGUCACAGGAUUAAAUGUGCAGUUUGGGGCUCUGGAAUUUGGGUCAGAACCUUCUCUCUCUGAAUUUGGAUCAGCUCCAAGCAGUGAAAAUAGUAAUCAGAUUCCCAUCAGCUUGUAUUCGAAGUCUUUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-113.00 kcal/mol

Ensemble Metrics

Free Energy: -121.40

Frequency: 0.0000

Diversity: 124.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.(((..(((.((((.....((((((..((..((((.((((.((.(.((((.(.((....((((((((((.(((((((.......(((((...((((....))))...)))))..................(((.(((((.......)))))..)))...(((((.....)))))...((((......((((........(((((.(((.....))).)))))..........))))...))))((((((.((....)))).))))...(((........))))))))))...)))))))))).)).).)))).).)).)))).)).)))).))))))....(((((((((((....))).....((.(((..((((((.....))))))))).))..........))))))))..)))).))).))).)))))((...))

Thermodynamic Ensemble Prediction

(((((.{{{,,(((.((((,,...{{{{{{..{{..|{{{,||||,{{.(.({{{.,.{{....((((((((((.,,(((((..,,,{.(((((,,,((((,...|}||...}}))).,..,,,,,}},...,...,,.,})}}}}}}}..,||||{{||{...{((((...,,,|||,...|||{.,....,(({........(((((.(((.....))).)))))..........}}},.|.|}}}{(((((.((....)))).)))}...||,....,},,)}})))))))}..)))))))))).}|.|.|}}}.}.}}.||},.}}.}|,|,||||||,,.||(((((((((,.,{{..,..,}.{|.|||,,|||{|{..,,,)))))))}).)}......,..}),}},,}}}}))}),)}).})}.)))))((...))