Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0007000

Sequence Length

451 nt

GC Content

0.4878

CAUUGAACUUCAAAUCUCAACCUGAGCCAUCCCCAGUUCUUAGCCAGUUGAGCCAGCGACAACAGCACCAGAGCCAGGCAGUCACUGUUCCUCCUCCUGGUUUGGAGUCCUUUCCUUCCCAGGCAAAACUUCGAGAAUCAACACCUGGAGACAGUCCCUCCACUGUGAACAAGCUUUUGCAGCUUCCCAGCACGACCAUUGAAAAUAUCUCUGUGUCUGUCCACCAGCCACAGCCCAAACACAUCAAACUUGCUAAGCGGCGGAUACCCCCAGCUUCUAAGAUCCCAGCUUCUGCAGUGGAAAUGCCUGGUUCAGCAGAUGUCACAGGAUUAAAUGUGCAGUUUGGGGCUCUGGAAUUUGGGUCAGAACCUUCUCUCUCUGAAUUUGGAUCAGCUCCAAGCAGUGAAAAUAGUAAUCAGAUUCCCAUCAGCUUGUAUUCGAAGUCUUUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-108.60 kcal/mol

Ensemble Metrics

Free Energy: -117.82

Frequency: 0.0000

Diversity: 130.27

Structure Visualization

Structure Prediction

MFE Structure Prediction

....((.((((.(((..(((.((((.....((((((..((..((((.((((.((.(.((((.(.((....((((((((((.(((((((.......(((((...((((....))))...)))))..................(((.(((((.......)))))..)))...(((((.....)))))...((((......((((........(((((.(((.....))).)))))..........))))...))))((((((.((....)))).))))...(((........))))))))))...)))))))))).)).).)))).).)).)))).)).)))).))))))....(((((((((((....))).....((.(((..((((((.....))))))))).))..........))))))))..)))).))).))).))))))......

Thermodynamic Ensemble Prediction

....({(((((.{{{,,(((.((((,{...{{{{{{..{{..|{{{,||||,{{.(,{{{{.,.||....((((((((((.,,(((((..,,,{.(((((,,,((((,...|}||...}}))).,..,,,,,}},...,...,,.,})}}}}}}}..,||||{{||{...{((((...,,,|||,...|||{.,....,(({........(((((.(((.....))).)))))..........}}},.|.|}}}{(((((.((....)))).)))}...||,....,},,)}})))))))}..)))))))))).}|.|,||}}.}.}}.|||,.}}.}|,|,||||||,,.||(((((((((,.{({..,.,,}.{|.|||,,|||{|{..,,,)))))))}),)}......,..}),}},,}}}}))}),)}}.}}}.)))))}......