Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0007600

Sequence Length

489 nt

GC Content

0.5133

UCAUCCGUCCUUGGCUCAGGAUUUGGAGAGCUUGCACCACCAAAAAUGGCAAACAUCACCAGCUCCCAGAUUUUGGACCAGUUGAAAGCUCCGAGUUUGGGCCAGUUUACCACCACCCCAAGUACACAGCAGAAUAGUACAAGUCACCCUACAACUACUACUUCUUGGGACCUCAAGCCCCCAACAUCCCAGUCCUCAGUCCUCAGUCAUCUUGACUUCAAAUCUCAACCUGAGCCAUCCCCAGUUCUUAGCCAGUUGAGCCAGCGACAACAGCACCAGAGCCAGGCAGUCACUGUUCCUCCUCCUGGUUUGGAGUCCUUUCCUUCCCAGGCAAAACUUCGAGAAUCAACACCUGGAGACAGUCCCUCCACUGUGAACAAGCUUUUGCAGCUUCCCAGCACGACCAUUGAAAAUAUCUCUGUGUCUGUCCACCAGCCACAGCCCAAACACAUCAAACUUGCUAAGCGGCGGAUACCCCCAGCUUCUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-107.30 kcal/mol

Ensemble Metrics

Free Energy: -117.44

Frequency: 0.0000

Diversity: 141.52

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((((((..(((((((((((((((.(((((((.....(((....))).......))..)))))))))))...((((....(((..(((..((..(((((...((((........((((((.........((.(((((...((......))...))))).)))))))).....)))).)))))..))..)))..)))))))..(((((...)))))...........))))))))).........((((((.(((((((.(((.(((..(.((......))...)..))).)))...)))..(((((...((((....))))...)))))......(((((...((..(((.(((((.......)))))..))).....((....)).(((....)))..))...))))).......(((((.(((.....))).))))).............)))).)))))).))))))))(.............)

Thermodynamic Ensemble Prediction

(.(((((((({(((((((((((((((.(((((((.....{{,....}))...........)))))))))))}}}||,,..,,({,..|{{,.{{{((((((,..({..........||||||,....,,.{(({(((((...({......}}...))))).))))|(((,......,..}}}},..}}..}}}..,,,}},,..(((({...}))))......{{{{{|||||||,,.........|{||||,|||||||..,(,,,{..,.||.,,,{{{,.,({,{{...))),,.,,.,}|||||}||((((,...|}||...,,)))..,,}}}},}}}..,,..|...(((((.......))))),||}|...,,(({...},,|||,...}}}..,....,||,........(((((.(((.....))).)))))..........,,,,.,,.)))))).)))))))}{.............)